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Report for CCDS28499.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28499.2 Public Mus musculus 17 Hagh 23 108 98 CCDS HistoryNCBI Gene:14651Re-query CCDS DB by CCDS ID:28499.2Re-query CCDS DB by GeneID:14651See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28499.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28499.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118788.7 ENSMUSP00000113051.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118788.7Link to Ensembl Protein Viewer:ENSMUSP00000113051.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118788Re-query CCDS DB by Protein ID:ENSMUSP00000113051
Original member NCBI NM_024284.2 NP_077246.2 Updated not alive Link to Nucleotide Sequence:NM_024284.2Link to Protein Sequence:NP_077246.2Re-query CCDS DB by Nucleotide ID:NM_024284Re-query CCDS DB by Protein ID:NP_077246
Current member NCBI NM_024284.3 NP_077246.2 Accepted alive Link to Nucleotide Sequence:NM_024284.3Link to Protein Sequence:NP_077246.2Re-query CCDS DB by Nucleotide ID:NM_024284Re-query CCDS DB by Protein ID:NP_077246Link to BLAST:NP_077246.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077246.2 309 Q99KB8-1 309 99.6764% 0 1

Chromosomal Locations for CCDS 28499.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24850593 24850668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24852731 24852906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24853632 24853696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24856638 24856755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24857516 24857624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24860946 24861049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24861313 24861414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24863677 24863756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24864193 24864292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGTGCTGGGTCGCGGGTCGCTGTGTCTCCGGAGCCTGTCAGCGCTGGGAGCCACCTGCGCGCGCCGTG
GTCTGGGTCAGGCCCTGCTGGGACTATCTCTGTGTCACTCAGACTTCAGGAAGAATCTGACTGTGCAGCA
AGACATAATGAAGGTTGAACTACTGCCTGCCCTGACTGACAACTACATGTACCTGATCATTGATGAGGAC
ACCCAGGAGGCCGCCATCGTGGACCCAGTGCAACCACAGAAGGTTATAGAAGCTGCGAAAAAGCACCGTG
TGAAACTGACCACAGTGCTCACCACTCACCACCACTGGGACCACGCTGGTGGGAACGAGAAGCTGGTGAA
GCTGGAGCCTGGGCTGAAGGTTTATGGAGGTGATGACCGCATCGGAGCCTTGACTCACAAGGTCACACAC
CTCTCCACACTGCAGGTGGGGTCTCTCAGTGTCAAATGCCTGTCAACACCCTGCCATACTTCGGGACACA
TCTGTTACTTTGTGAGCAAGCCTGGGAGCTCAGAGCCTTCTGCTGTGTTCACAGGTGACACATTGTTTGT
TGCTGGCTGTGGGAAGTTCTATGAGGGAACTGCAGATGAGATGTACAAGGCGCTGCTTGAAGTCTTGGGC
CGGCTTCCTCCAGACACAAAAGTCTACTGTGGTCATGAATACACCGTAAACAACCTTAAGTTTGCACGCC
ATGTGGAGCCCGGCAATGCTGCCATTCAAGAGAAACTAGCCTGGGCCAAGGAGAAGTATGCCATCGGGGA
GCCCACGGTGCCATCCACCCTGGCAGAAGAGTTCACCTACAACCCCTTCATGAGAGTGAAGGAGAAGACT
GTGCAACAGCATGCTGGCGAGACAGACCCTGTGACCACCATGAGGGCCATCCGCAGGGAGAAGGACCAGT
TCAAGGTGCCTCGGGACTGA

Translation (309 aa):
MVLGRGSLCLRSLSALGATCARRGLGQALLGLSLCHSDFRKNLTVQQDIMKVELLPALTDNYMYLIIDED
TQEAAIVDPVQPQKVIEAAKKHRVKLTTVLTTHHHWDHAGGNEKLVKLEPGLKVYGGDDRIGALTHKVTH
LSTLQVGSLSVKCLSTPCHTSGHICYFVSKPGSSEPSAVFTGDTLFVAGCGKFYEGTADEMYKALLEVLG
RLPPDTKVYCGHEYTVNNLKFARHVEPGNAAIQEKLAWAKEKYAIGEPTVPSTLAEEFTYNPFMRVKEKT
VQQHAGETDPVTTMRAIRREKDQFKVPRD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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