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Report for CCDS28538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28538.1 Public Mus musculus 17 Pigq 23 108 98 CCDS HistoryNCBI Gene:14755Re-query CCDS DB by CCDS ID:28538.1Re-query CCDS DB by GeneID:14755See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026823.15 ENSMUSP00000026823.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026823.15Link to Ensembl Protein Viewer:ENSMUSP00000026823.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026823Re-query CCDS DB by Protein ID:ENSMUSP00000026823
Original member Current member EBI ENSMUST00000208043.1 ENSMUSP00000146704.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208043.1Link to Ensembl Protein Viewer:ENSMUSP00000146704.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208043Re-query CCDS DB by Protein ID:ENSMUSP00000146704
Original member NCBI NM_011822.4 NP_035952.2 Updated not alive Link to Nucleotide Sequence:NM_011822.4Link to Protein Sequence:NP_035952.2Re-query CCDS DB by Nucleotide ID:NM_011822Re-query CCDS DB by Protein ID:NP_035952
Current member NCBI NM_011822.5 NP_035952.2 Accepted alive Link to Nucleotide Sequence:NM_011822.5Link to Protein Sequence:NP_035952.2Re-query CCDS DB by Nucleotide ID:NM_011822Re-query CCDS DB by Protein ID:NP_035952Link to BLAST:NP_035952.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035952.2 581 Q9QYT7 581 100% 0 0

Chromosomal Locations for CCDS 28538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25927604 25927756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25928791 25928852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25930521 25930635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25930958 25931038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25931462 25931573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25931674 25931827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25932105 25932231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25934758 25934878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25935003 25935134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25936764 25937452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGTGCTCAAGGTCTTCTTCCCCACGTGCTGTGCCTCGGCAGACAGTGGCCTGTTAGTGGGACGATGGG
TTCCAGGACAGAGCAGTGCTGTGATCCTGGCCGTGGTGCACTTTCCCTTCATCCCCATCCAAGTCAAGGA
GCTCCTGGCCCAGGTGCAGAAGGCCAGTCAAGTACCAGTGGCTGTGCTAGGGACCTGGTGCCACCGTCAG
CAGGAACCGCAGGAGAGCCTGGGGAATTTCCTGGAGGGCCTGGGCACCATCTTCTCCCATGACCCCTGGT
TGCAGCTCTGCCGGGAGAGGGGTACCAGACTCTGGAGCTGCAAGGCCACTTACCCGCAGATGTCTAACCC
TCTGGACATGCACCCCGAAGAGCAGGTCATGCTCATCTTCTATGATCAGCGCAAGCTGCTGCTCTCCTGG
TTGCATCCGCCTCCAGTCCTGCCTGCCTGCCAGATGGGAGACACCACAGCCAGCACCGGAGGCCTAGCTG
ACATCTTTGACACAGTGGCACGCAGCGAGGTGCTCTTCCGAAATGACCAATTTGATGAGAGACCCGTACG
CCTGAGCCACTGGCAATCAGAGGGAGTGGAGGCCAGCATACTTGTGGAGTTGGCAAAGCGGGCCTCTGGG
CCTGTCTGCCTGCTGCTGGCTTCTCTGTTGTCCCTGATCTCAGCAGCTAGTGCTTGCCGGCTATGGAAGC
TGTGGCCACTTTCCTTCATCAGAAGCAAGCTCTCCACTTGTGAGCAGCTCCATCACCGGCTGAAGCACCT
CTCCTTCATCTTCAGCACGGAGAAAGCCCAGAATCCCATGCAGCTGATGAGGAAGGCCAACATGCTGGTT
TCTGTGCTACTGGATGTGGCCCTTGGCTTGCTGCTGCTCTCTTGGCTCCACAGCAATAACCGAATTGGAC
AGCTGGCCAATGCCCTGGTCCCTGTGGCTGATCGCGTGGCTGAGGAGCTCCAGCATCTGCTGCAGTGGCT
GATGGGTGCTCCTGCTGGGCTCAAGATGAATCGGGCACTGGATCAGGTGCTAGGCCGCTTTTTCCTGTAC
CACATCCATCTGTGGATAAGCTATATCCACCTTATGTCCCCCTTTATTGAGCATATCCTGTGGCATGTGG
GACTCTCAGCCTGCCTTGGACTGACTGTTGCTCTGTCCATCTTTTCGGATATCATCGCCCTTCTCACCTT
CCACATCTATTGCTTCTATGTCTACGGTGCCAGGCTGTACTGCCTGAAGATCTATGGCCTTTCCTCTCTC
TGGCGTCTGTTCCGGGGGAAGAAGTGGAATGTTCTGCGCCAGCGAGTGGATTCTTGTTCCTATGACCTTG
ACCAGCTCTTCATTGGGACCTTGCTCTTCACCATCCTGGTCTTCTTGCTACCCACCACCGCTCTGTACTA
CCTGGTATTCACCCTGCTCCGGCTCCTGGTGATCACTGTGCAAGGCTTAATCCATCTACTTGTAGACCTC
ATCAATTCCCTGCCACTATACTCCCTTGGCCTTCGACTCTGCCGACCCTACAGGCTGGCAGCTGGTGTGA
AGTTCAGAGTTCTGGAAAAGGAGGCAGGCAGACCCCTCCGCCTCCTGATGCAGATAAACCCCCTGTCCTA
TAACCATGTGATGCACATCTACCGTCTGCCTCGCTGTGGCTGCCATCCCAAGCACTCCTGGGGTACCCTG
TGCCGAAAGCTGGTCTTCGGAGAGCTCATCTACCCCTGGAGGCAGAGAGAGGACAAACAGGACTGA

Translation (581 aa):
MVLKVFFPTCCASADSGLLVGRWVPGQSSAVILAVVHFPFIPIQVKELLAQVQKASQVPVAVLGTWCHRQ
QEPQESLGNFLEGLGTIFSHDPWLQLCRERGTRLWSCKATYPQMSNPLDMHPEEQVMLIFYDQRKLLLSW
LHPPPVLPACQMGDTTASTGGLADIFDTVARSEVLFRNDQFDERPVRLSHWQSEGVEASILVELAKRASG
PVCLLLASLLSLISAASACRLWKLWPLSFIRSKLSTCEQLHHRLKHLSFIFSTEKAQNPMQLMRKANMLV
SVLLDVALGLLLLSWLHSNNRIGQLANALVPVADRVAEELQHLLQWLMGAPAGLKMNRALDQVLGRFFLY
HIHLWISYIHLMSPFIEHILWHVGLSACLGLTVALSIFSDIIALLTFHIYCFYVYGARLYCLKIYGLSSL
WRLFRGKKWNVLRQRVDSCSYDLDQLFIGTLLFTILVFLLPTTALYYLVFTLLRLLVITVQGLIHLLVDL
INSLPLYSLGLRLCRPYRLAAGVKFRVLEKEAGRPLRLLMQINPLSYNHVMHIYRLPRCGCHPKHSWGTL
CRKLVFGELIYPWRQREDKQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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