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Report for CCDS28544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28544.1 Public Mus musculus 17 Nme4 23 108 98 CCDS HistoryNCBI Gene:56520Re-query CCDS DB by CCDS ID:28544.1Re-query CCDS DB by GeneID:56520See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025007.6 ENSMUSP00000025007.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025007.6Link to Ensembl Protein Viewer:ENSMUSP00000025007.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025007Re-query CCDS DB by Protein ID:ENSMUSP00000025007
Original member Current member NCBI NM_019731.1 NP_062705.1 Accepted alive Link to Nucleotide Sequence:NM_019731.1Link to Protein Sequence:NP_062705.1Re-query CCDS DB by Nucleotide ID:NM_019731Re-query CCDS DB by Protein ID:NP_062705Link to BLAST:NP_062705.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062705.1 186 Q9WV84 186 100% 0 0

Chromosomal Locations for CCDS 28544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26092029 26092152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26093617 26093729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26093859 26093960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26094137 26094270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26095365 26095452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGGCAGCCTTTTCGGGCGCGTCGCGGCGCTGCGGGCGCTGTTGTGCGGGCCACGCTTTCAGTGCCTGC
TGGTGCGCCCCAGTTCCGGAGGCCCCCCCTGGCCCCAAGAGCGGACGCTGGTTGCTGTGAAGCCAGATGG
GGTACAGAGGAGACTAGTGGGGACTGTGATACAACGCTTTGAGAGGCGGGGCTTCAAGCTCGTGGGGATG
AAGATGCTGCAGGCACCAGAAAGCATCCTTGCTGAGCACTACCGGGACCTACAGAGGAAGCCATTCTACC
CAGCTCTTATCAGCTACATGAGCTCTGGGCCTGTGGTGGCCATGGTCTGGGAAGGCCCCAATGTGGTCCA
TATCTCAAGGGCCATGATAGGACACACCGACTCAACAGAGGCAGCCCCCGGGACAATCAGGGGCGACTTC
AGTGTTCACATCAGCAGGAACGTCATCCATGCTAGCGATTCTGTGGATGGGGCCCAGAGGGAGATCGAGC
TGTGGTTTCAGAGCAGCGAACTGTTGAACTGGGCAGATGGTGGTCACCACAGCAGCTGCTACCCTGCCTG
A

Translation (186 aa):
MGSLFGRVAALRALLCGPRFQCLLVRPSSGGPPWPQERTLVAVKPDGVQRRLVGTVIQRFERRGFKLVGM
KMLQAPESILAEHYRDLQRKPFYPALISYMSSGPVVAMVWEGPNVVHISRAMIGHTDSTEAAPGTIRGDF
SVHISRNVIHASDSVDGAQREIELWFQSSELLNWADGGHHSSCYPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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