NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28610.1 Public Mus musculus 17 Cbs 23 108 98 CCDS HistoryNCBI Gene:12411Re-query CCDS DB by CCDS ID:28610.1Re-query CCDS DB by GeneID:12411See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078509.11 ENSMUSP00000077597.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078509.11Link to Ensembl Protein Viewer:ENSMUSP00000077597.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078509Re-query CCDS DB by Protein ID:ENSMUSP00000077597
Original member Current member EBI ENSMUST00000118504.8 ENSMUSP00000113209.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118504.8Link to Ensembl Protein Viewer:ENSMUSP00000113209.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118504Re-query CCDS DB by Protein ID:ENSMUSP00000113209
Original member NCBI NM_001271353.1 NP_001258282.1 Updated not alive Link to Nucleotide Sequence:NM_001271353.1Link to Protein Sequence:NP_001258282.1Re-query CCDS DB by Nucleotide ID:NM_001271353Re-query CCDS DB by Protein ID:NP_001258282
Current member NCBI NM_001271353.2 NP_001258282.1 Accepted alive Link to Nucleotide Sequence:NM_001271353.2Link to Protein Sequence:NP_001258282.1Re-query CCDS DB by Nucleotide ID:NM_001271353Re-query CCDS DB by Protein ID:NP_001258282Link to BLAST:NP_001258282.1
Original member NCBI NM_178224.3 NP_835742.1 Updated not alive Link to Nucleotide Sequence:NM_178224.3Link to Protein Sequence:NP_835742.1Re-query CCDS DB by Nucleotide ID:NM_178224Re-query CCDS DB by Protein ID:NP_835742
Current member NCBI NM_178224.4 NP_835742.1 Accepted alive Link to Nucleotide Sequence:NM_178224.4Link to Protein Sequence:NP_835742.1Re-query CCDS DB by Nucleotide ID:NM_178224Re-query CCDS DB by Protein ID:NP_835742Link to BLAST:NP_835742.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258282.1 547 Q91WT9-2 547 100% 0 0
NP_835742.1 547 Q91WT9-2 547 100% 0 0

Chromosomal Locations for CCDS 28610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31613190 31613293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31615474 31615558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31616046 31616154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31617127 31617261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31617388 31617462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31619138 31619243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31620929 31621013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31621438 31621563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31622427 31622518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31624229 31624298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31624999 31625133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31625491 31625570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31625883 31626017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31627476 31627582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31632828 31633027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGCCTTCAGGGACATCCCAGTGTGAAGATGGCTCTGCTGGGGGCTTCCAGCACTTGGACATGCACTCAG
AAAAGAGACAACTGGAGAAGGGCCCCTCAGGGGACAAGGATCGAGTCTGGATCCGGCCTGATACCCCAAG
CAGATGTACCTGGCAGCTGGGCAGGGCCATGGCGGACTCCCCACATTATCACACAGTGCTGACCAAATCC
CCCAAAATTTTACCAGATATTCTGAGGAAAATTGGGAACACCCCTATGGTCAGAATCAACAAGATCTCAA
AGAATGCCGGTCTCAAGTGTGAGCTCTTGGCCAAGTGTGAGTTCTTCAATGCGGGTGGGAGTGTGAAGGA
CCGCATCAGCCTTCGGATGATCGAAGATGCTGAGCGAGCTGGAAACTTGAAGCCTGGAGACACTATCATT
GAGCCAACTTCTGGCAACACAGGGATCGGGCTGGCTCTGGCTGCTGCAGTGAAGGGCTATCGCTGCATTA
TCGTGATGCCGGAGAAGATGAGTATGGAGAAGGTGGATGTGCTGCGGGCTCTGGGAGCCGAGATTGTGAG
GACGCCCACCAATGCCAGATTTGATTCCCCCGAGTCCCACGTGGGAGTGGCATGGCGACTGAAGAACGAA
ATCCCTAATTCTCACATTCTGGACCAGTACCGCAATGCCAGCAACCCTTTGGCACACTACGATGACACCG
CCGAGGAGATCCTGCAGCAGTGTGACGGGAAGCTGGATATGCTGGTGGCTTCAGCAGGCACGGGTGGCAC
CATCACAGGGATCGCCAGAAAGCTGAAGGAGAAGTGCCCTGGCTGTAAAATCATCGGTGTCGATCCTGAA
GGCTCCATCCTTGCGGAGCCCGAGGAGCTGAACCAGACGGAGCAAACAGCCTATGAGGTGGAAGGGATTG
GCTACGACTTCATCCCGACAGTCCTGGACAGGGCGGTGGTGGATAAGTGGTTCAAGAGCAACGATGAAGA
TTCCTTCGCCTTTGCCCGCATGCTCATCGCACAGGAAGGACTGCTATGTGGTGGAAGCTCTGGCAGCGCC
ATGGCTGTGGCTGTGAAGGCTGCCCGGGAGCTGCAGGAAGGGCAGCGCTGTGTGGTCATCCTGCCTGACT
CTGTGCGGAACTACATGTCCAAGTTCCTGAGTGACAAATGGATGCTGCAGAAAGGTTTCATGAAAGAGGA
GCTCTCAGTGAAGAGGCCCTGGTGGTGGCGTCTGCGTGTTCAAGAGCTGAGCCTGTCGGCCCCGCTGACC
GTGTTGCCCACGGTCACCTGTGAGGACACCATCGCCATCCTCCGGGAGAAGGGTTTTGACCAGGCACCTG
TGGTCAACGAGTCTGGGGCCATCCTAGGGATGGTGACCCTCGGGAACATGCTGTCATCCCTGCTGGCTGG
AAAGGTGCGGCCATCAGACGAAGTCTGCAAAGTCCTCTACAAGCAGTTCAAACCGATCCACCTGACCGAC
ACGCTGGGCACACTCTCTCACATCCTGGAGATGGACCACTTCGCCCTGGTGGTCCACGAGCAGATCCAAT
ACTGCAGCAATGGCATGTCCAGCAAGCAGCAGATGGTGTTTGGGGTTGTCACTGCCATTGACCTGCTAAA
CTTCGTGGCAGCCCGTGAGCAGACCCAGACATAG

Translation (547 aa):
MPSGTSQCEDGSAGGFQHLDMHSEKRQLEKGPSGDKDRVWIRPDTPSRCTWQLGRAMADSPHYHTVLTKS
PKILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTII
EPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNE
IPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPE
GSILAEPEELNQTEQTAYEVEGIGYDFIPTVLDRAVVDKWFKSNDEDSFAFARMLIAQEGLLCGGSSGSA
MAVAVKAARELQEGQRCVVILPDSVRNYMSKFLSDKWMLQKGFMKEELSVKRPWWWRLRVQELSLSAPLT
VLPTVTCEDTIAILREKGFDQAPVVNESGAILGMVTLGNMLSSLLAGKVRPSDEVCKVLYKQFKPIHLTD
TLGTLSHILEMDHFALVVHEQIQYCSNGMSSKQQMVFGVVTAIDLLNFVAAREQTQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH