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Report for CCDS28620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28620.1 Public Mus musculus 17 Cyp4f15 23 108 98 CCDS HistoryNCBI Gene:106648Re-query CCDS DB by CCDS ID:28620.1Re-query CCDS DB by GeneID:106648See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168171.7 ENSMUSP00000129264.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168171.7Link to Ensembl Protein Viewer:ENSMUSP00000129264.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168171Re-query CCDS DB by Protein ID:ENSMUSP00000129264
Original member Current member NCBI NM_134127.1 NP_598888.1 Accepted alive Link to Nucleotide Sequence:NM_134127.1Link to Protein Sequence:NP_598888.1Re-query CCDS DB by Nucleotide ID:NM_134127Re-query CCDS DB by Protein ID:NP_598888Link to BLAST:NP_598888.1

Chromosomal Locations for CCDS 28620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32685798 32685811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32686059 32686257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32690644 32690788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32692416 32692469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32692558 32692685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32695274 32695395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32697773 32698043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32699931 32699997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32700205 32700334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32701883 32702037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32702126 32702190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32702332 32702414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32702789 32702960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGGGTTTTTCAGGATGCCACAGTTGGACCTGTCTTGGCTGGGACTGAGGCTGGAGGCATCCTCACCAT
GGCTGCTTTTGCTGCTGATCGGAGCTTCCTGGCTCTTGGCCCGTGTCCTGACTCAGACCTATATCTTCTA
CAGAACATATCATCATCTTTGTGATTTCCCTCAACCCCCCAAATGGAATTGGTTCTTGGGTCACCTAGGC
ATGATCACACCCACTGAGCATGGTCTGAAGGAGGTGACTAACCTGGTGGCCACCTACCCCCAGGGCTTCA
TGACATGGCTGGGTCCTATCATTCCTATCATCACTCTGTGCCACCCTGACATCATTCGATCTGTTCTCAA
TGCCTCAGCTTCGGTAGCCCTAAAGGAAGTAGTCTTCTACAGTTTCCTGAAACCTTGGCTGGGGGATGGG
CTCTTGCTGAGTGATGGTGACAAGTGGAGCAGCCACCGTCGCATGTTGACACCTGCTTTCCATTTCAACA
TCCTAAAACCCTATGTGAAGATTTTCAATGACAGCACCAACATAATGCATGCCAAGTGGCAGCACCTGGC
CTCAGGTGGCAGCGCCCGTCTGGATGTGTTTGAGAACATCAGCCTCATGACCTTGGACAGCCTGCAGAAA
TGTGTCTTCAGTTTTGATAGCAACTGCCAGGAGAATCCCAGTGAGTATATTTCTGCCATCTTGGAGCTCA
GTGCCTTAGTGACCAAACGGTACCACCAGCTGCTTCTACACATAGACTCACTCTATCAGCTCACCTGTAG
TGGGCGGCGCTTCCACAAGGCCTGCCACCTGGTGCACAGCTTCACAGATGCTGTCATCCAGGATCGACGA
CGTACTCTCCCCAGTAAGCATGAGGATGATGTCCTCAAGGCCAAGGCTAAGTCCAAAACTCTGGATTTCA
TTGATGTGCTGCTGCTGAGCAAGGATGAAGATGGAAAGGAGCTGTCAGATGAGGACATTAGAGCAGAGGC
TGACACCTTCATGTTTGAGGGCCATGACACCACAGCCAGCGGGCTCTCCTGGATCCTGTACAATCTGGCA
AGGCACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAGGAGCTGCTGAGGGATCGAGAGTCTACAG
AAATTGAGTGCTCCTGTGCTGTGTTCCTTAGGGACGACTTGGCCCAGCTACCCTTCCTGACCATGTGCAT
CAAGGAGAGTCTGCGGCTGCATCCCCCAGTCACGGTCATTTCCCGTCGTTGTACCCAAGACATTGTGCTC
CCAGATGGCCGGGTCATACCTAAAGGTGTTATCTGCATCATCAATATTTTCGCGACCCATCACAACCCAA
CTGTGTGGCCTGACCCTGAGGTTTATGACCCCTTCCGCTTTGACCCAGAGAATATCAAGGACAGGTCACC
TCTGGCTTTTATTCCCTTCTCCGCTGGGCCCAGGAACTGCATAGGACAGACGTTTGCTATGAACGAGATG
AAGGTGGCGCTGGCGCTGACGCTGCTGCGCTTCCGTGTGCTGCCAGATGACAAGGAGCCGCGCCGGAAGC
CCGAGTTGATCCTGCGCGCAGAGGGCGGGCTGTGGCTGCGGGTGGAGCCGCTGAGCACACAGTGA

Translation (534 aa):
MGFFRMPQLDLSWLGLRLEASSPWLLLLLIGASWLLARVLTQTYIFYRTYHHLCDFPQPPKWNWFLGHLG
MITPTEHGLKEVTNLVATYPQGFMTWLGPIIPIITLCHPDIIRSVLNASASVALKEVVFYSFLKPWLGDG
LLLSDGDKWSSHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWQHLASGGSARLDVFENISLMTLDSLQK
CVFSFDSNCQENPSEYISAILELSALVTKRYHQLLLHIDSLYQLTCSGRRFHKACHLVHSFTDAVIQDRR
RTLPSKHEDDVLKAKAKSKTLDFIDVLLLSKDEDGKELSDEDIRAEADTFMFEGHDTTASGLSWILYNLA
RHPEYQERCRQEVQELLRDRESTEIECSCAVFLRDDLAQLPFLTMCIKESLRLHPPVTVISRRCTQDIVL
PDGRVIPKGVICIINIFATHHNPTVWPDPEVYDPFRFDPENIKDRSPLAFIPFSAGPRNCIGQTFAMNEM
KVALALTLLRFRVLPDDKEPRRKPELILRAEGGLWLRVEPLSTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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