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Report for CCDS28668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28668.1 Public Mus musculus 17 Neu1 23 108 98 CCDS HistoryNCBI Gene:18010Re-query CCDS DB by CCDS ID:28668.1Re-query CCDS DB by GeneID:18010See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007253.5 ENSMUSP00000007253.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007253.5Link to Ensembl Protein Viewer:ENSMUSP00000007253.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000007253Re-query CCDS DB by Protein ID:ENSMUSP00000007253
Original member Current member NCBI NM_010893.3 NP_035023.3 Accepted alive Link to Nucleotide Sequence:NM_010893.3Link to Protein Sequence:NP_035023.3Re-query CCDS DB by Nucleotide ID:NM_010893Re-query CCDS DB by Protein ID:NP_035023Link to BLAST:NP_035023.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035023.3 409 O35657 409 100% 0 0

Chromosomal Locations for CCDS 28668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34931407 34931547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34931916 34932108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34932566 34932828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34934003 34934185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34934283 34934505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34934605 34934831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGTGGGGGCAGACCCGACCAGACCCCGGGGACCGCTGAGCTATTGGGCGGGCCGTCGGGGTCAGGGGC
TCGCAGCGATCTTCCTGCTCCTGGTGTCCGCGGCGGAATCCGAGGCCAGGGCAGAGGATGACTTCAGCCT
GGTGCAGCCGCTGGTGACCATGGAGCAGCTGCTGTGGGTGAGCGGGAAGCAGATCGGCTCTGTAGACACT
TTCCGCATCCCGCTCATCACAGCCACCCCTCGGGGCACGCTCCTGGCCTTCGCTGAGGCCAGGAAAAAAT
CTGCATCCGATGAGGGGGCCAAGTTCATCGCCATGAGGAGGTCCACGGACCAGGGTAGCACGTGGTCCTC
TACAGCCTTCATCGTAGACGATGGGGAGGCCTCCGATGGCCTGAACCTGGGCGCTGTGGTGAACGATGTA
GACACAGGGATAGTGTTCCTTATCTATACCCTCTGTGCTCACAAGGTCAACTGCCAGGTGGCCTCTACCA
TGTTGGTTTGGAGTAAGGACGACGGCATTTCCTGGAGCCCACCCCGGAATCTCTCTGTGGATATTGGCAC
AGAGATGTTTGCCCCTGGACCTGGCTCAGGCATTCAGAAACAGCGGGAGCCTGGGAAGGGCCGGCTCATT
GTGTGTGGACACGGGACGCTGGAGCGAGATGGGGTCTTCTGTCTCCTCAGTGATGACCACGGTGCCTCCT
GGCACTACGGCACTGGAGTGAGCGGCATTCCCTTTGGCCAGCCCAAACACGATCACGATTTCAACCCCGA
CGAGTGCCAGCCCTACGAGCTTCCAGATGGCTCGGTCATCATCAACGCCCGGAACCAGAATAACTACCAT
TGCCGCTGCAGGATCGTCCTCCGCAGCTATGACGCCTGTGACACCCTCAGGCCCCGGGATGTGACCTTCG
ACCCTGAGCTCGTGGACCCTGTGGTAGCTGCAGGAGCACTAGCCACCAGCTCCGGCATTGTCTTCTTCTC
CAATCCAGCCCACCCTGAGTTCCGAGTGAACCTGACCCTGCGCTGGAGTTTCAGCAATGGTACATCCTGG
CAGAAGGAGAGGGTCCAGGTGTGGCCGGGACCCAGCGGCTACTCGTCCCTGACAGCCCTGGAAAACAGCA
CGGATGGAAAGAAGCAGCCCCCGCAGCTGTTCGTTCTGTACGAGAAAGGCCTGAACCGGTACACCGAGAG
CATCTCCATGGTCAAAATCAGCGTCTACGGCACGCTCTGA

Translation (409 aa):
MVGADPTRPRGPLSYWAGRRGQGLAAIFLLLVSAAESEARAEDDFSLVQPLVTMEQLLWVSGKQIGSVDT
FRIPLITATPRGTLLAFAEARKKSASDEGAKFIAMRRSTDQGSTWSSTAFIVDDGEASDGLNLGAVVNDV
DTGIVFLIYTLCAHKVNCQVASTMLVWSKDDGISWSPPRNLSVDIGTEMFAPGPGSGIQKQREPGKGRLI
VCGHGTLERDGVFCLLSDDHGASWHYGTGVSGIPFGQPKHDHDFNPDECQPYELPDGSVIINARNQNNYH
CRCRIVLRSYDACDTLRPRDVTFDPELVDPVVAAGALATSSGIVFFSNPAHPEFRVNLTLRWSFSNGTSW
QKERVQVWPGPSGYSSLTALENSTDGKKQPPQLFVLYEKGLNRYTESISMVKISVYGTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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