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Report for CCDS28796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28796.1 Public Mus musculus 17 Pla2g7 23 108 98 CCDS HistoryNCBI Gene:27226Re-query CCDS DB by CCDS ID:28796.1Re-query CCDS DB by GeneID:27226See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28796.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024706.11 ENSMUSP00000024706.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024706.11Link to Ensembl Protein Viewer:ENSMUSP00000024706.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024706Re-query CCDS DB by Protein ID:ENSMUSP00000024706
Original member NCBI NM_013737.5 NP_038765.2 Updated not alive Link to Nucleotide Sequence:NM_013737.5Link to Protein Sequence:NP_038765.2Re-query CCDS DB by Nucleotide ID:NM_013737Re-query CCDS DB by Protein ID:NP_038765
Current member NCBI NM_013737.6 NP_038765.2 Accepted alive Link to Nucleotide Sequence:NM_013737.6Link to Protein Sequence:NP_038765.2Re-query CCDS DB by Nucleotide ID:NM_013737Re-query CCDS DB by Protein ID:NP_038765Link to BLAST:NP_038765.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038765.2 440 Q60963 440 100% 0 0

Chromosomal Locations for CCDS 28796.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 43588598 43588703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43594289 43594410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43594779 43594923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43596903 43596996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43599074 43599142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43600495 43600618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43602828 43602941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43604557 43604648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43607235 43607405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43611269 43611417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43611843 43611979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGGTACCACTCAAACTGCAGGCGCTTTTCTGCCTCCTCTGCTGCCTCCCATGGGTCCATCCTTTTCACT
GGCAAGACACATCTTCTTTTGACTTCAGGCCGTCAGTAATGTTTCACAAGCTCCAATCGGTGATGTCTGC
TGCCGGCTCTGGCCATAGTAAAATCCCCAAAGGAAATGGATCGTACCCCGTCGGTTGTACAGATCTGATG
TTCGGTTATGGGAATGAGAGCGTCTTCGTGCGTTTGTACTACCCAGCTCAAGATCAAGGTCGCCTCGACA
CTGTTTGGATCCCAAACAAAGAATATTTTTTGGGTCTTAGTATATTTCTTGGAACACCCAGTATTGTAGG
CAATATTTTACACCTCTTATATGGTTCTCTGACAACTCCTGCAAGCTGGAATTCTCCTTTGAGGACTGGA
GAAAAATACCCACTCATTGTCTTTTCTCATGGTCTCGGAGCCTTCAGGACGATTTATTCTGCTATTGGCA
TTGGCTTGGCATCTAATGGGTTTATAGTGGCCACTGTCGAACACAGAGACAGATCTGCATCGGCAACTTA
CTTTTTTGAAGACCAGGTGGCTGCAAAAGTGGAAAACAGGTCTTGGCTTTACCTGAGAAAAGTAAAACAA
GAGGAGTCGGAAAGTGTCCGGAAAGAACAGGTTCAGCAAAGAGCAATAGAATGTTCCCGGGCTCTCAGTG
CGATTCTTGACATTGAACATGGAGACCCAAAAGAGAATGTACTAGGTTCAGCTTTTGACATGAAACAGCT
GAAGGATGCTATTGATGAGACTAAAATAGCTTTGATGGGACATTCTTTTGGAGGAGCAACAGTTCTTCAA
GCCCTTAGTGAGGACCAGAGATTCAGATGTGGAGTTGCTCTTGATCCATGGATGTATCCGGTGAACGAAG
AGCTGTACTCCAGAACCCTCCAGCCTCTCCTCTTTATCAACTCTGCCAAATTCCAGACTCCAAAGGACAT
CGCAAAAATGAAAAAGTTCTACCAGCCTGACAAGGAAAGGAAAATGATTACAATCAAGGGCTCAGTGCAC
CAGAACTTTGACGACTTTACTTTTGTAACTGGCAAAATAATTGGAAACAAGCTGACACTGAAAGGAGAAA
TCGATTCCAGAGTAGCCATCGACCTCACCAACAAAGCTTCGATGGCTTTCTTACAAAAGCATTTAGGGCT
TCAGAAAGACTTTGATCAGTGGGACCCTCTGGTGGAAGGAGATGATGAGAACCTGATTCCTGGGTCACCC
TTTGACGCAGTCACCCAGGTCCCGGCTCAGCAACACTCTCCAGGATCACAGACCCAGAATTAG

Translation (440 aa):
MVPLKLQALFCLLCCLPWVHPFHWQDTSSFDFRPSVMFHKLQSVMSAAGSGHSKIPKGNGSYPVGCTDLM
FGYGNESVFVRLYYPAQDQGRLDTVWIPNKEYFLGLSIFLGTPSIVGNILHLLYGSLTTPASWNSPLRTG
EKYPLIVFSHGLGAFRTIYSAIGIGLASNGFIVATVEHRDRSASATYFFEDQVAAKVENRSWLYLRKVKQ
EESESVRKEQVQQRAIECSRALSAILDIEHGDPKENVLGSAFDMKQLKDAIDETKIALMGHSFGGATVLQ
ALSEDQRFRCGVALDPWMYPVNEELYSRTLQPLLFINSAKFQTPKDIAKMKKFYQPDKERKMITIKGSVH
QNFDDFTFVTGKIIGNKLTLKGEIDSRVAIDLTNKASMAFLQKHLGLQKDFDQWDPLVEGDDENLIPGSP
FDAVTQVPAQQHSPGSQTQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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