NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28799.1 Public Mus musculus 17 Cyp39a1 23 108 98 CCDS HistoryNCBI Gene:56050Re-query CCDS DB by CCDS ID:28799.1Re-query CCDS DB by GeneID:56050See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28799.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170988.1 ENSMUSP00000130073.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170988.1Link to Ensembl Protein Viewer:ENSMUSP00000130073.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170988Re-query CCDS DB by Protein ID:ENSMUSP00000130073
Original member Current member NCBI NM_018887.4 NP_061375.1 Accepted alive Link to Nucleotide Sequence:NM_018887.4Link to Protein Sequence:NP_061375.1Re-query CCDS DB by Nucleotide ID:NM_018887Re-query CCDS DB by Protein ID:NP_061375Link to BLAST:NP_061375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061375.1 470 Q9JKJ9 470 100% 0 0

Chromosomal Locations for CCDS 28799.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 43667609 43667794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43676831 43676966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43680124 43680298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43682948 43683097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43685186 43685276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43691634 43691738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43701477 43701567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43725515 43725648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43730972 43731067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43731925 43732013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43746525 43746612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43749904 43749975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGGCATTATGGAGTTATTCTCACCAATAGCAATCGCCGTTCTGGGAAGCTGTGTTCTTTTCTTATTCT
CTCGGTTGAAGAATTTGCTTGGACCCCCGTGCATCCAAGGCTGGATTCCCTGGATTGGAGCTGGACTTGA
GTTTGGGAAAGCCCCTCTTGAATTTATAGAAAAAGCAAGAATCAAGTATGGACCGGTATTTACCATCTTT
GCTATGGGAAACCGAATGACCTTTGTTAGTGAAGAAGAAGGAATCAATGTGCTTCTAAAATCTGAACATG
TAGATTTTGAATCAGCAGTACAAAGTCCTGTCTATCACACAGCATGGATTCCAAAGAATGTCTTCTCTGC
ACTGCATGAGCGACTGTATGCCTTGATGAAAGGGAAGATGGGAACTTTCAACACACATCACTTTACTGGG
CCGCTAACTGAAGAACTTCATGAGCAACTGGAAGGTTTAGGCACTCATGGAACAATGGACCTGAATGACT
TTGTAAGGTATCTACTTTATCCAGCCACACTCAATACCCTCTTTAAGAAAGGGTTGTTTCTCACAGACAA
GAGGACAATCAAGGAATTCTACCAGCAGTTTAAAACCTATGATGAGGGCTTTGAGTATGGCTCCCAGCTG
CCTGAATGGCTTCTGAGAAACTGGTCAAAATCCAAAAGATGGCTCCTGGCGCTGTTTGAGAAAAATATTG
GCAACATAAAAGCTCACGGATCTGCAGGTCATTCTGGAACCCTCTTGCAGGCCATATTGGAAGTGGTGGA
GACGGAAACACGTCAATACAGTCCAAATTATGGACTGGTCGTACTTTGGGCTGCTCTGGCCAATGCTCCT
CCTATTGCATTCTGGACACTTGGATATATCCTGTCTCATCCCGATATCCACAGGACTGTTTTAGAAAGCA
TATCTTCTGTGTTTGGCACTGCAGGTAAAGACAAGATTAAAGTGTCTGAAGATGACCTGAAGAAGCTTCT
AATAATTAAGTGGTGCATTCTGGAATCTGTCCGCTTGAGAGCCCCTGGTGTCATTACTAGAAAGGTAGTG
AAGCCAGTTAAAATTCTGAATCACACAGTTCCTTCTGGTGATCTGCTGATGTTGTCTCCATTCTGGCTAC
ACAGAAATCCAAAATATTTTCCTGAACCTGAGTCATTCAAACCTGAACGCTGGAAAGAGGCAAATTTAGA
TAAGTACATTTTCTTGGACTACTTCATGGCATTTGGAGGCGGGAAGTTCCAGTGTCCTGGAAGGTGGTTT
GCTCTCTTAGAGATTCAACTATGCATTATCTTAGTGCTGTATAAGTACGAATGCAGTCTTCTGGACCCAT
TACCAAAGCAGAGTTCTCGTCATTTGGTGGGTGTCCCCCAGCCTGCAGGGAAATGCCGGATTGAATATAA
ACAAAGAGCTTGA

Translation (470 aa):
MGIMELFSPIAIAVLGSCVLFLFSRLKNLLGPPCIQGWIPWIGAGLEFGKAPLEFIEKARIKYGPVFTIF
AMGNRMTFVSEEEGINVLLKSEHVDFESAVQSPVYHTAWIPKNVFSALHERLYALMKGKMGTFNTHHFTG
PLTEELHEQLEGLGTHGTMDLNDFVRYLLYPATLNTLFKKGLFLTDKRTIKEFYQQFKTYDEGFEYGSQL
PEWLLRNWSKSKRWLLALFEKNIGNIKAHGSAGHSGTLLQAILEVVETETRQYSPNYGLVVLWAALANAP
PIAFWTLGYILSHPDIHRTVLESISSVFGTAGKDKIKVSEDDLKKLLIIKWCILESVRLRAPGVITRKVV
KPVKILNHTVPSGDLLMLSPFWLHRNPKYFPEPESFKPERWKEANLDKYIFLDYFMAFGGGKFQCPGRWF
ALLEIQLCIILVLYKYECSLLDPLPKQSSRHLVGVPQPAGKCRIEYKQRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH