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Report for CCDS28813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28813.1 Public Mus musculus 17 Slc29a1 23 108 98 CCDS HistoryNCBI Gene:63959Re-query CCDS DB by CCDS ID:28813.1Re-query CCDS DB by GeneID:63959See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28813.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064889.12 ENSMUSP00000063757.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064889.12Link to Ensembl Protein Viewer:ENSMUSP00000063757.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064889Re-query CCDS DB by Protein ID:ENSMUSP00000063757
Original member Current member EBI ENSMUST00000171847.7 ENSMUSP00000126703.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171847.7Link to Ensembl Protein Viewer:ENSMUSP00000126703.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171847Re-query CCDS DB by Protein ID:ENSMUSP00000126703
Original member Current member EBI ENSMUST00000163492.7 ENSMUSP00000129242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163492.7Link to Ensembl Protein Viewer:ENSMUSP00000129242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163492Re-query CCDS DB by Protein ID:ENSMUSP00000129242
Original member NCBI NM_001199115.1 NP_001186044.1 Updated not alive Link to Nucleotide Sequence:NM_001199115.1Link to Protein Sequence:NP_001186044.1Re-query CCDS DB by Nucleotide ID:NM_001199115Re-query CCDS DB by Protein ID:NP_001186044
Current member NCBI NM_001199115.2 NP_001186044.1 Accepted alive Link to Nucleotide Sequence:NM_001199115.2Link to Protein Sequence:NP_001186044.1Re-query CCDS DB by Nucleotide ID:NM_001199115Re-query CCDS DB by Protein ID:NP_001186044Link to BLAST:NP_001186044.1
Original member NCBI NM_001199116.1 NP_001186045.1 Updated not alive Link to Nucleotide Sequence:NM_001199116.1Link to Protein Sequence:NP_001186045.1Re-query CCDS DB by Nucleotide ID:NM_001199116Re-query CCDS DB by Protein ID:NP_001186045
Current member NCBI NM_001199116.2 NP_001186045.1 Accepted alive Link to Nucleotide Sequence:NM_001199116.2Link to Protein Sequence:NP_001186045.1Re-query CCDS DB by Nucleotide ID:NM_001199116Re-query CCDS DB by Protein ID:NP_001186045Link to BLAST:NP_001186045.1
Original member NCBI NM_001357771.1 NP_001344700.1 Updated not alive Link to Nucleotide Sequence:NM_001357771.1Link to Protein Sequence:NP_001344700.1Re-query CCDS DB by Nucleotide ID:NM_001357771Re-query CCDS DB by Protein ID:NP_001344700
Current member NCBI NM_001357771.2 NP_001344700.1 Accepted alive Link to Nucleotide Sequence:NM_001357771.2Link to Protein Sequence:NP_001344700.1Re-query CCDS DB by Nucleotide ID:NM_001357771Re-query CCDS DB by Protein ID:NP_001344700Link to BLAST:NP_001344700.1
Original member NCBI NM_022880.3 NP_075018.1 Updated not alive Link to Nucleotide Sequence:NM_022880.3Link to Protein Sequence:NP_075018.1Re-query CCDS DB by Nucleotide ID:NM_022880Re-query CCDS DB by Protein ID:NP_075018
Current member NCBI NM_022880.4 NP_075018.1 Accepted alive Link to Nucleotide Sequence:NM_022880.4Link to Protein Sequence:NP_075018.1Re-query CCDS DB by Nucleotide ID:NM_022880Re-query CCDS DB by Protein ID:NP_075018Link to BLAST:NP_075018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186044.1 458 Q9JIM1-2 458 100% 0 0
NP_001186045.1 458 Q9JIM1-2 458 100% 0 0
NP_001344700.1 458 Q9JIM1-2 458 100% 0 0
NP_075018.1 458 Q9JIM1-2 458 100% 0 0

Chromosomal Locations for CCDS 28813.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45585671 45585782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45586094 45586305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45587228 45587313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45587562 45587670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45588289 45588386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45589002 45589074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45589208 45589305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45589414 45589548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45589681 45589820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45589923 45590125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45590257 45590338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45592179 45592207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGACAACCAGTCACCAGCCTCAGGACAGGTATAAGGCAGTATGGCTTATCTTCTTTGTGCTGGGCCTGG
GGACACTGCTCCCCTGGAATTTTTTTATGACCGCAACCAAGTATTTCACAAACCGCCTGGACGTGTCCCA
GAATGTGTCCTCGGACACTGATCAATCATGCGAAAGCACCAAGGCCTTGGCTGACCCCACAGTGGCCTTG
CCAGCCCGGAGTTCTCTCAGTGCCATCTTCAACAATGTCATGACCCTGTGTGCCATGCTGCCCTTGCTGG
TCTTCACCTGCCTCAACTCGTTTCTGCATCAGCGGATCTCTCAATCTGTTCGGATCTTGGGCAGCCTGCT
GGCAATCCTGCTGGTATTCCTTGTCACTGCCGCCCTGGTGAAGGTGGAGATGGATGCTCTGATCTTCTTT
GTCATCACCATGATCAAGATTGTGCTCATCAATTCATTTGGTGCCATTTTGCAAGCCAGCCTTTTTGGTC
TGGCAGGTGTCCTGCCAGCCAACTACACAGCCCCCATCATGAGTGGCCAGGGCCTGGCTGGCTTCTTCAC
CTCTGTCGCCATGATCTGTGCCATTGCCAGTGGTTCTGAGCTGTCAGAAAGCGCCTTTGGCTACTTCATC
ACAGCCTGTGCAGTTGTCATTTTGGCCATCCTGTGCTACCTGGCTCTGCCTCGGACGGAATTCTATCGCC
ATTACCTGCAGCTCAACCTTGCGGGGCCTGCAGAGCAGGAGACCAAGTTGGATCTCATAAGAGAGGAGCC
AAAAGGAAGAAGAGAGGAATCTGGGGTGCCAGGCCCCAACTCTCCACCCACCAACAGAAACCAGTCTATC
AAAGCCATACTTAAGAGTATCTGTGTCCCGGCTCTGTCTGTCTGCTTCATCTTCACGGTTACCATTGGGT
TGTTCCCTGCTGTGACTGCTGAGGTGGAATCCAGCATCGCAGGCACAAGTCCCTGGAAAAGCTACTTCAT
TCCCGTGGCCTGTTTCTTGAATTTCAATGTCTTTGACTGGCTAGGCCGGAGCCTCACTGCTGTCTGCATG
TGGCCTGGCCAGGATAGCCGCTGGCTGCCGGTTTTGGTCGCCTCGAGGATTGTGTTTATTCCCCTGCTGA
TGCTCTGCAACGTGAAGGCTCGCCACTGCGGCGCGCAGCGGCACCACTTCGTCTTTAAGCATGACGCCTG
GTTCATCGCCTTCATGGCTGCCTTTGCCTTCTCCAATGGCTACCTCGCCAGCCTCTGCATGTGCTTCGGG
CCCAAGAAAGTCAAACCAGCTGAGGCGGAGACAGCAGGAAACATCATGTCCTTCTTTCTGTGTCTGGGCC
TGGCTCTGGGAGCTGTGTTGTCCTTCTTGTTAAGGGCACTTGTGTGA

Translation (458 aa):
MTTSHQPQDRYKAVWLIFFVLGLGTLLPWNFFMTATKYFTNRLDVSQNVSSDTDQSCESTKALADPTVAL
PARSSLSAIFNNVMTLCAMLPLLVFTCLNSFLHQRISQSVRILGSLLAILLVFLVTAALVKVEMDALIFF
VITMIKIVLINSFGAILQASLFGLAGVLPANYTAPIMSGQGLAGFFTSVAMICAIASGSELSESAFGYFI
TACAVVILAILCYLALPRTEFYRHYLQLNLAGPAEQETKLDLIREEPKGRREESGVPGPNSPPTNRNQSI
KAILKSICVPALSVCFIFTVTIGLFPAVTAEVESSIAGTSPWKSYFIPVACFLNFNVFDWLGRSLTAVCM
WPGQDSRWLPVLVASRIVFIPLLMLCNVKARHCGAQRHHFVFKHDAWFIAFMAAFAFSNGYLASLCMCFG
PKKVKPAEAETAGNIMSFFLCLGLALGAVLSFLLRALV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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