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Report for CCDS2888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2888.1 Public Homo sapiens 3 RPP14 24 110 108 CCDS HistoryNCBI Gene:11102Re-query CCDS DB by CCDS ID:2888.1Re-query CCDS DB by GeneID:11102See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2888.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295959.10 ENSP00000295959.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295959.10Link to Ensembl Protein Viewer:ENSP00000295959.5Re-query CCDS DB by Nucleotide ID:ENST00000295959Re-query CCDS DB by Protein ID:ENSP00000295959
Original member Current member EBI ENST00000445193.7 ENSP00000412894.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445193.7Link to Ensembl Protein Viewer:ENSP00000412894.2Re-query CCDS DB by Nucleotide ID:ENST00000445193Re-query CCDS DB by Protein ID:ENSP00000412894
Original member Current member EBI ENST00000466547.1 ENSP00000419909.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000466547.1Link to Ensembl Protein Viewer:ENSP00000419909.1Re-query CCDS DB by Nucleotide ID:ENST00000466547Re-query CCDS DB by Protein ID:ENSP00000419909
Original member Current member NCBI NM_001098783.3 NP_001092253.1 Accepted alive Link to Nucleotide Sequence:NM_001098783.3Link to Protein Sequence:NP_001092253.1Re-query CCDS DB by Nucleotide ID:NM_001098783Re-query CCDS DB by Protein ID:NP_001092253Link to BLAST:NP_001092253.1
Original member Current member NCBI NM_007042.6 NP_008973.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007042.6Link to Protein Sequence:NP_008973.1Re-query CCDS DB by Nucleotide ID:NM_007042Re-query CCDS DB by Protein ID:NP_008973Link to BLAST:NP_008973.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092253.1 124 O95059 124 100% 0 0
NP_008973.1 124 O95059 124 100% 0 0

Chromosomal Locations for CCDS 2888.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58310330 58310406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58310507 58310591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58316515 58316591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58316915 58316993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58317440 58317496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGCCTGCCCCTGCTGCCACATATGAAAGAGTAGTTTACAAAAACCCTTCCGAGTACCACTACATGAAAG
TCTGCCTAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGC
TGTGAAGGACCTGTTTGGGGAGGTTGATGCCGCCTTACCTTTGGACATCCTAACCTATGAAGAGAAGACC
TTGTCAGCCATCTTGAGAATATGTAGCAGTGGTCTTGTCAAATTGTGGAGCTCTTTGACCCTGTTAGGAT
CCTATAAAGGCAAAAAATGTGCTTTCCGGGTGATTCAGGTTTCTCCATTTCTTCTTGCATTATCTGGTAA
TAGTAGGGAACTAGTATTGGATTGA

Translation (124 aa):
MPAPAATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEVDAALPLDILTYEEKT
LSAILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVSPFLLALSGNSRELVLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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