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Report for CCDS28968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28968.1 Public Mus musculus 17 Srd5a2 23 108 98 CCDS HistoryNCBI Gene:94224Re-query CCDS DB by CCDS ID:28968.1Re-query CCDS DB by GeneID:94224See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043458.8 ENSMUSP00000048862.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043458.8Link to Ensembl Protein Viewer:ENSMUSP00000048862.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043458Re-query CCDS DB by Protein ID:ENSMUSP00000048862
Original member Current member NCBI NM_053188.3 NP_444418.1 Accepted alive Link to Nucleotide Sequence:NM_053188.3Link to Protein Sequence:NP_444418.1Re-query CCDS DB by Nucleotide ID:NM_053188Re-query CCDS DB by Protein ID:NP_444418Link to BLAST:NP_444418.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444418.1 254 Q99N99 254 100% 0 0

Chromosomal Locations for CCDS 28968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74017706 74017772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74021384 74021534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74024454 74024555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74026978 74027141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74047547 74047827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGCCGATTGTGTGCCATCAGGTCCCGGTGCTGGCAGGTAGCGCCACATTGGCCACCATGGGGACCCTGA
TCCTGTGCTTTGGGAAACCCGCCAGTTACGGGAAACACAGCGAGAGTGTGTCGTCGGGAGTTCCCCTCCT
GCCCGCACGCATAGCCTGGTTCCTGCAGGAGCTGCCTTCCTTTGTGGTGTCGGTAGGGATGCTCGCTTGG
CAGCCGCGCTCCCTCTTTGGACCTCCGGGGAATGTGCTGCTGGGTCTCTTCTCCGCACATTACTTCCACA
GGACATTTATTTACTCATTGCTCACCAGAGGCAGGCCTTTATCAGCGGTGATCTTTCTGAAAGCCACTGC
CTTCTGCATAGGGAACGGACTCCTGCAAGCCTATTACCTGGTTTATTGCGCGGAATACCCTGAGGAGTGG
TACACAGACATGCGGTTTAGCGTCGGTGTCTTCTTCTTTATTCTGGGGATGGGGATCAACATCCACAGTG
ACTGCATGCTGCGCCAGCTCAGGAAGCCCGGAGAGGTCATCTACAGGATCCCACAAGGTGGCTTGTTTAC
GTATGTGTCTGGAGCCAATTTCCTGGGCGAGATTATTGAATGGATGGGCTACGCTTTGGCCACTTGGTCT
GTTCCAGCCTTTGCTTTTGCATTTTTCACACTTTGTTTCCTGGGGATGCAAGCTTTTTACCACCACAGGT
TCTACCTCAAGATGTTTAAGGATTACCCCAAATCTAGGAAAGCCCTCATTCCATTCATCTTTTAA

Translation (254 aa):
MPIVCHQVPVLAGSATLATMGTLILCFGKPASYGKHSESVSSGVPLLPARIAWFLQELPSFVVSVGMLAW
QPRSLFGPPGNVLLGLFSAHYFHRTFIYSLLTRGRPLSAVIFLKATAFCIGNGLLQAYYLVYCAEYPEEW
YTDMRFSVGVFFFILGMGINIHSDCMLRQLRKPGEVIYRIPQGGLFTYVSGANFLGEIIEWMGYALATWS
VPAFAFAFFTLCFLGMQAFYHHRFYLKMFKDYPKSRKALIPFIF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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