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Report for CCDS28986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28986.1 Public Mus musculus 17 Cyp1b1 23 108 98 CCDS HistoryNCBI Gene:13078Re-query CCDS DB by CCDS ID:28986.1Re-query CCDS DB by GeneID:13078See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024894.1 ENSMUSP00000024894.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024894.1Link to Ensembl Protein Viewer:ENSMUSP00000024894.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000024894Re-query CCDS DB by Protein ID:ENSMUSP00000024894
Original member Current member NCBI NM_009994.2 NP_034124.1 Accepted alive Link to Nucleotide Sequence:NM_009994.2Link to Protein Sequence:NP_034124.1Re-query CCDS DB by Nucleotide ID:NM_009994Re-query CCDS DB by Protein ID:NP_034124Link to BLAST:NP_034124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034124.1 543 Q64429 543 100% 0 0

Chromosomal Locations for CCDS 28986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79710093 79710681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79713269 79714311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGGCCACCAGCCTTAGTGCAGACAGTCCACAGCAGCTGAGCTCGCTGTCTACCCAGCAGACCACTCTTC
TGCTACTCTTCTCCGTCCTGGCCGCCGTGCACTTAGGCCAGTGGCTGCTGCGACAGTGGCAACGGAAACC
GTGGTCCTCGCCCCCAGGTCCCTTTCCTTGGCCACTGATCGGAAACGCGGCGGCTGTTGGCCAGGCGTCG
CACTTGTACTTCGCTCGCCTTGCAAGGCGCTATGGCGACGTTTTCCAGATCCGTCTGGGCAGCTGTCCCG
TGGTGGTGCTGAATGGAGAGAGTGCCATCCACCAGGCCCTGGTGCAGCAGGGCAGCATCTTCGCGGACCG
GCCGCCCTTCGCCTCTTTCCGTGTGGTGTCTGGTGGCCGCAGTCTGGCGTTCGGTCACTACTCTGAGCAC
TGGAAGACGCAGCGACGCTCGGCCTATAGCACGATGCGTGCTTTCTCCACGCGCCACCCGCGCAGTCGCG
GTCTTCTCGAGGGCCACGCGCTGGCAGAGGCTCGAGAATTGGTGGCAGTGCTGGTGCGGCGCTGTGCGGG
CGGCGCCTTCCTCGATCCAACGCAGCCGGTCATTGTGGCGGTGGCCAACGTCATGAGCGCTGTGTGCTTC
GGCTGTCGGTACAACCACGACGATGCGGAGTTCCTAGAGCTGCTCAGCCACAATGAGGAGTTCGGGCGCA
CAGTGGGTGCGGGCAGCCTGGTGGATGTGCTGCCCTGGCTGCAGCTATTTCCCAACCCGGTGCGCACCAC
CTTCCGCAAGTTCGAGCAGCTCAACCGCAACTTCAGCAACTTCGTTCTGGACAAGTTCCTGAGGCACCGC
GAAAGCCTGGTGCCCGGGGCTGCTCCTCGAGACATGACGGACGCCTTCATCCTCTCTGCCGAAAAGAAAG
CGTCTGGGGCCCCTGGCGACGATTCCTCCGGGCTGGACTTGGAGGATGTGCCTGCCACTATTACGGACAT
CTTCGGAGCCAGCCAGGACACCCTTTCCACCGCGCTGCTGTGGCTGCTCATCCTCTTTACCAGATACCCG
GATGTTCAGGCCCGCGTGCAGGCTGAGTTGGACCAGGTTGTGGGGAGGGACCGCCTGCCCTGCATGAGTG
ACCAGCCCAACCTGCCATATGTCATGGCTTTTCTTTATGAATCAATGCGATTCTCCAGCTTTTTGCCTGT
CACCATTCCACACGCCACCACCGCCAACACCTTTGTTTTAGGTTACTACATCCCCAAGAATACGGTCGTT
TTTGTTAACCAGTGGTCTGTGAATCATGACCCAGCCAAGTGGCCTAACCCAGAGGACTTTGATCCAGCCC
GCTTCCTGGACAAGGACGGCTTCATTAACAAGGCGCTAGCCAGCAGTGTGATGATATTCTCAGTGGGCAA
ACGGAGGTGCATCGGTGAGGAACTGTCTAAGATGCTTCTGTTTCTCTTCATCTCCATCCTCGCTCATCAG
TGCAATTTCAAGGCTAACCAAAATGAGTCCTCAAACATGAGTTTCAGTTATGGCCTGACCATTAAGCCCA
AGTCGTTTAGAATCCATGTGTCTCTCAGAGAGTCGATGGAACTCCTGGATAATGCTGTTAAAAAGCTGCA
AACTGAGGAAGGCTGCAAGTGA

Translation (543 aa):
MATSLSADSPQQLSSLSTQQTTLLLLFSVLAAVHLGQWLLRQWQRKPWSSPPGPFPWPLIGNAAAVGQAS
HLYFARLARRYGDVFQIRLGSCPVVVLNGESAIHQALVQQGSIFADRPPFASFRVVSGGRSLAFGHYSEH
WKTQRRSAYSTMRAFSTRHPRSRGLLEGHALAEARELVAVLVRRCAGGAFLDPTQPVIVAVANVMSAVCF
GCRYNHDDAEFLELLSHNEEFGRTVGAGSLVDVLPWLQLFPNPVRTTFRKFEQLNRNFSNFVLDKFLRHR
ESLVPGAAPRDMTDAFILSAEKKASGAPGDDSSGLDLEDVPATITDIFGASQDTLSTALLWLLILFTRYP
DVQARVQAELDQVVGRDRLPCMSDQPNLPYVMAFLYESMRFSSFLPVTIPHATTANTFVLGYYIPKNTVV
FVNQWSVNHDPAKWPNPEDFDPARFLDKDGFINKALASSVMIFSVGKRRCIGEELSKMLLFLFISILAHQ
CNFKANQNESSNMSFSYGLTIKPKSFRIHVSLRESMELLDNAVKKLQTEEGCK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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