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Report for CCDS29154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29154.1 Public Mus musculus 18 Slc4a9 23 108 98 CCDS HistoryNCBI Gene:240215Re-query CCDS DB by CCDS ID:29154.1Re-query CCDS DB by GeneID:240215See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074298.12 ENSMUSP00000073910.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074298.12Link to Ensembl Protein Viewer:ENSMUSP00000073910.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074298Re-query CCDS DB by Protein ID:ENSMUSP00000073910
Original member Current member EBI ENSMUST00000235181.1 ENSMUSP00000157460.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235181.1Link to Ensembl Protein Viewer:ENSMUSP00000157460.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235181Re-query CCDS DB by Protein ID:ENSMUSP00000157460
Original member Current member NCBI NM_172830.2 NP_766418.1 Accepted alive Link to Nucleotide Sequence:NM_172830.2Link to Protein Sequence:NP_766418.1Re-query CCDS DB by Nucleotide ID:NM_172830Re-query CCDS DB by Protein ID:NP_766418Link to BLAST:NP_766418.1

Chromosomal Locations for CCDS 29154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36528187 36528404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36528643 36528803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36529216 36529329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36529687 36529736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36529873 36530030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36530276 36530363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36530714 36530868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36531100 36531216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36531434 36531526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36531970 36532232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36533185 36533243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36533577 36533762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36533889 36534002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36535282 36535443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36535523 36535701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36536847 36536919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36539310 36539378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36539604 36539777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36540736 36540891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36541199 36541252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2643 nt):
ATGAAGCTGCCAGGGCAGGGGGATTTTGAAAGCTCTGATGCTCATGAAAATGCTCACTCAGAGGAACCGG
ACAGTGGCCTAGGCCCTGGCCCTGGCCTTAATGGACCCTCAGGCATAGACATTGGGGAATCTCAGGTGTC
TAAGGACCCTCTGCTCTTCATTCAACTAAATGAGCTGCTGGGTTGGCCCCAGGCACTAGAGTGGCGAGAG
ACAGGCAGGTGGCTGCTGTTCGAGGAAAAGCTAGACATGGGCGCGGGCCGGTGGAGTGCTCCCCATGTGC
CTACCCTGGAACTCCCCAGCCTCCAGAAGCTTCGAAGTCTGTTGGCCGAGGGCATTGTCCTGCTAGACTG
TCAGGCTCAGAGCCTCCTGGAGCTTGTGGAGCAGGTAGTCAGTGGGGAGTCACTGAGCCCAGAACTGAGA
GGACAGCTTCAGGCCTTGCTCCTGCAGAGACCCCAGCACCACATCCAGACCATGGGCATCAGGCCCTGCA
GAGAGTCCAATGCTTTCAGAAAGGCTTCTCGTGATGAGGACGCCCCACTGAAGCACCAGAACCCTTTGAG
ACAGAAGCTGCCCGCTGGAGCTGAGGCAGCGGCAGTGTTGGCAGGAGAGCTGGGCTTCCTGGAACAGCCA
CTAGGGGCCTTCGTAAGACTGCGGAATCCTATAGTGCTGGAGCCTCTTACAGAGATGATCTTGCCCAGCA
GATTTTTCTGCCTCCTCTTGGGTCCTCCCACCCTGGGAAGGAGCTACCATGAGATGGGACGGGCAGCTGC
TGTCCTCCTCAGTGACCCGCAATTCCAGTGGTCAGTTCGTCGGGCAAGCCATCTTCCTGACCTTCTGGCA
GCTCTGGATGCCTTCCTGCAGGAGGTGACAGCTCTACCCCCGGGCCGGTGGGACCGGACAGCCCGGATTC
CCCCACCCAAATACCTACCATCTCAGCACAAAAGATTCCCCTCGAAACTGCAGGAGGTCACCAGCCTCTC
CCGACAGAGTGCTGCCCTAGCAGAAGACAAGCACCATCACGGACCGCACACACCCATCCCAGAATTGCAA
AGGACAGGCAGTGTTTCTCAGCTGTGTTCTACATTTACCTGGCCACAGTCACAAACGCCATCACTTTTGG
GGGTCTTCTGGGAGATGCCACTGAAGGTGCCCAGAGATTACAGCCTGGATTATCTGCCCTTCCGCCTATG
GGTCGGCATCTGGGTGACCGCATTTTGCCTGGCACTGGTGGCTACGGAGGCCAGCTTGCTGGTGCGCTAC
TTCACCAGATTCACAGAGGAAGGATTCTGTGCCCTCATCAGCCTCATCTTCATCTATGATGCCATGGGGA
AGATGCTGAATTTGATCCGTGCCTATCCAATCCAAAGGCCAGGGTCTTCTGCCTATGGTTGCTTCTGTCA
ATACCCAGGCACAGGAGGAAACACGTCTGAATGGACGAGTGCAAAGCTCAAAGACACAGAGGACATCTTA
AGTGTGCCAGGTCTAGTCAATGCTTCCTTCCTGCCTCCACCTGAGTGCATCCGGCAAGGAGGTCACCCTC
TCGGCCCCAGCTGTCACACGGTGCCAGACATCGCCTTCTTCTCCCTTCTCCTCTTCTTTACTTCTTTCCT
TTGTGCCATTGCTCTCAAGCACATAAAGAACAGCCGCTTCTTCCCCTCTGTGGTGCGCAAGGTGTTGGGC
GACTTTTCCTCAGTCCTGGCCATCCTGCTGGGCTGTGGCCTTGACACCTTCCTGGGCCTAGCCACACCGA
AGCTCTTGGTGCCCACAGAATTCAAGCCTACACTCTCTGGGCGTGGCTGGCTGGTGTCTCCTTTTGGAGC
TAACCCCTGGTGGCTGAGTGTGGCCGCTGCCTTGCCCGCTCTACTGCTGTCAATCCTTATCTTCATGGAC
CAGCAGATCACGGCAGTCATCCTCAACCGTGCAGAATACAGACTGCAGAAGGGAGCTGGCTTCCACCTGG
ACCTCTTCTGTGTGGCTGTTTTGATGCTGTTCACATCGGCACTTGGGCTGCCATGGTACGTCTCAGCCAC
TGTCATCTCCTTGGCCCACATAGACAGTCTTCGGAGAGAGAGCAAAGCCTGCATCCCTGGAGAAGCCCCC
AATTTCCTGGGCATCAGGGAACAGAGGCTGACGGGCTTGGTGGTGTTCGTCCTTACAGGTGTCTCCATCT
TCCTGGCACCTGTGCTCAAGTTCATCCCGATGCCCGTGCTCTACGGCATCTTCCTGTACATGGGGGTAGC
CGCGCTCAGCAGCATCCAGTTCGTGAAGAGAGTGCAGCTATTGTTGATGCCAAGGAAACATCAGCCAGAC
ATGCTGCTCCTGCGGCATGTGCCTCTGAGCAGAGTTCACCTCTTCACAGCCATCCAGCTTGCCTGCCTAG
GTCTGCTTTGGGTAGTCAAGTCTACCCCTGCAGCCATTGTCTTCCCACTCATGTTACTGGGCCTGGTGGC
CATCCGGAAGGCACTGGAGTGGGTCTTCTCACCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCAGAG
GAGGAGGAGACCATCCCCGAGAACAGGTCCGAGCCAGAGCACTTGTTCAGTGGAAATGACAGTGAAGATT
CAGAACTGATGTATCAGCCCAAGGCTCCAGAAATCAACATCTCTGTGAATTAG

Translation (880 aa):
MKLPGQGDFESSDAHENAHSEEPDSGLGPGPGLNGPSGIDIGESQVSKDPLLFIQLNELLGWPQALEWRE
TGRWLLFEEKLDMGAGRWSAPHVPTLELPSLQKLRSLLAEGIVLLDCQAQSLLELVEQVVSGESLSPELR
GQLQALLLQRPQHHIQTMGIRPCRESNAFRKASRDEDAPLKHQNPLRQKLPAGAEAAAVLAGELGFLEQP
LGAFVRLRNPIVLEPLTEMILPSRFFCLLLGPPTLGRSYHEMGRAAAVLLSDPQFQWSVRRASHLPDLLA
ALDAFLQEVTALPPGRWDRTARIPPPKYLPSQHKRFPSKLQEVTSLSRQSAALAEDKHHHGPHTPIPELQ
RTGSVSQLCSTFTWPQSQTPSLLGVFWEMPLKVPRDYSLDYLPFRLWVGIWVTAFCLALVATEASLLVRY
FTRFTEEGFCALISLIFIYDAMGKMLNLIRAYPIQRPGSSAYGCFCQYPGTGGNTSEWTSAKLKDTEDIL
SVPGLVNASFLPPPECIRQGGHPLGPSCHTVPDIAFFSLLLFFTSFLCAIALKHIKNSRFFPSVVRKVLG
DFSSVLAILLGCGLDTFLGLATPKLLVPTEFKPTLSGRGWLVSPFGANPWWLSVAAALPALLLSILIFMD
QQITAVILNRAEYRLQKGAGFHLDLFCVAVLMLFTSALGLPWYVSATVISLAHIDSLRRESKACIPGEAP
NFLGIREQRLTGLVVFVLTGVSIFLAPVLKFIPMPVLYGIFLYMGVAALSSIQFVKRVQLLLMPRKHQPD
MLLLRHVPLSRVHLFTAIQLACLGLLWVVKSTPAAIVFPLMLLGLVAIRKALEWVFSPQELLWLDELMPE
EEETIPENRSEPEHLFSGNDSEDSELMYQPKAPEINISVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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