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Report for CCDS29201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29201.1 Public Mus musculus 18 Gnpda1 23 108 98 CCDS HistoryNCBI Gene:26384Re-query CCDS DB by CCDS ID:29201.1Re-query CCDS DB by GeneID:26384See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29201.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063814.14 ENSMUSP00000069081.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063814.14Link to Ensembl Protein Viewer:ENSMUSP00000069081.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000063814Re-query CCDS DB by Protein ID:ENSMUSP00000069081
Original member Current member NCBI NM_011937.2 NP_036067.2 Accepted alive Link to Nucleotide Sequence:NM_011937.2Link to Protein Sequence:NP_036067.2Re-query CCDS DB by Nucleotide ID:NM_011937Re-query CCDS DB by Protein ID:NP_036067Link to BLAST:NP_036067.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036067.2 289 O88958 289 100% 0 0

Chromosomal Locations for CCDS 29201.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 38328873 38328973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38330486 38330660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38331968 38332152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38333154 38333336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38335016 38335117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38338091 38338214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGAAGCTCATTATCCTGGAACACTATTCCCAGGCCAGTGAGTGGGCGGCCAAGTATATTAGGAACCGTA
TCATCCAGTTTAACCCAGGGCCTGACAAGTACTTCACCCTGGGGCTCCCCACTGGGAGCACCCCGCTTGG
CTGCTACCAGAAGCTGATCGAGTACTATAAGAATGGGGACCTGTCCTTTCAATATGTGAAAACCTTCAAC
ATGGACGAGTATGTGGGTCTTCCTCGAGACCACCCAGAGAGTTACCACTCCTTCATGTGGAATAATTTCT
TCAAGCACATTGACATCCACCCTGAAAACACCCACATTTTGGATGGAAATGCGGCTGACCTGCAGGCCGA
GTGTGACGCCTTTGAGGAGAAGATCCAGGCTGCCGGAGGGATCGAACTCTTTGTCGGAGGCATTGGCCCC
GATGGACACATTGCCTTCAATGAGCCAGGCTCCAGCCTGGTGTCCAGGACCCGTGTGAAGACTCTGGCTA
TGGACACCATCCTGGCCAACGCTAGGTTCTTTGATGGTGATCTTGCCAAGGTGCCCACCATGGCCCTGAC
AGTGGGGGTCGGCACTGTCATGGATGCTAAAGAGGTGATGATCCTCATCACAGGCGCTCACAAGGCCTTT
GCTCTGTACAAAGCCATCGAGGAGGGCGTGAACCACATGTGGACGGTGTCCGCCTTTCAGCAGCACCCCC
GCACTGTGTTTGTGTGTGACGAGGACGCCACCTTGGAACTAAAAGTGAAGACAGTCAAATATTTCAAAGG
TTTAATGCTTGTTCATAACAAGCTGGTGGACCCCCTGTACAGTATCAAGGAGAAGGAAATTCAGAAAAGC
CAATCTGCGAAGAAGCCATACAGTGACTAG

Translation (289 aa):
MKLIILEHYSQASEWAAKYIRNRIIQFNPGPDKYFTLGLPTGSTPLGCYQKLIEYYKNGDLSFQYVKTFN
MDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAADLQAECDAFEEKIQAAGGIELFVGGIGP
DGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGDLAKVPTMALTVGVGTVMDAKEVMILITGAHKAF
ALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKEIQKS
QSAKKPYSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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