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Report for CCDS29242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29242.1 Public Mus musculus 18 Hsd17b4 23 108 98 CCDS HistoryNCBI Gene:15488Re-query CCDS DB by CCDS ID:29242.1Re-query CCDS DB by GeneID:15488See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025385.6 ENSMUSP00000025385.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025385.6Link to Ensembl Protein Viewer:ENSMUSP00000025385.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025385Re-query CCDS DB by Protein ID:ENSMUSP00000025385
Original member Current member NCBI NM_008292.4 NP_032318.2 Accepted alive Link to Nucleotide Sequence:NM_008292.4Link to Protein Sequence:NP_032318.2Re-query CCDS DB by Nucleotide ID:NM_008292Re-query CCDS DB by Protein ID:NP_032318Link to BLAST:NP_032318.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032318.2 735 P51660 735 100% 0 0

Chromosomal Locations for CCDS 29242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 50128352 50128409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50130126 50130179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50139448 50139555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50140340 50140399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50142470 50142491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50142593 50142639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50144741 50144825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50146390 50146577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50155127 50155218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50158385 50158409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50160135 50160263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50162102 50162202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50164615 50164851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50166884 50166935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50170720 50170791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50172028 50172131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50173664 50173729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50177172 50177241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50177907 50178013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50179047 50179133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50181932 50182018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50183159 50183297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50191712 50191839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50195855 50195944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGGCTTCGCCGCTGAGGTTCGACGGGCGTGTGGTCTTGGTCACCGGCGCCGGGGGAGGATTGGGCCGAG
CTTACGCCCTGGCGTTTGCAGAAAGAGGAGCATTAGTCATTGTGAACGACTTAGGAGGGGACTTCAAGGG
AATTGGTAAAGGCTCCTCTGCTGCAGACAAGGTTGTGGCAGAGATAAGAAGGAAAGGCGGAAAAGCAGTG
GCCAATTACGATTCAGTTGAAGCAGGCGAGAAGCTTGTGAAGACGGCACTGGACACATTTGGCAGAATAG
ACGTTGTGGTCAACAATGCTGGAATCCTGAGGGACCGTTCCTTCTCCAGGATAAGTGATGAAGACTGGGA
TATAATTCATAGAGTTCATTTGCGGGGCTCCTTCCAAGTGACCCGGGCAGCATGGGACCATATGAAGAAA
CAGAATTATGGAAGAATCCTTATGACTTCCTCAGCTTCTGGAATATATGGCAACTTTGGCCAGGCGAATT
ATAGTGCTGCAAAGCTGGGCATTCTGGGTCTCTGCAATACTCTCGCCATTGAAGGCAGGAAGAACAACAT
TCATTGCAACACCATTGCCCCCAACGCTGGGTCACGGATGACGGAGACTGTGTTGCCGGAAGATCTTGTT
GAAGCCCTGAAGCCAGAGTATGTGGCCCCTCTGGTGCTTTGGCTTTGCCATGAGAGCTGTGAGGAAAATG
GTGGCCTATTTGAGGTTGGAGCAGGATGGATTGGAAAATTGCGCTGGGAGAGGACCCTGGGCGCCATCGT
CAGAAAGCGGAATCAGCCCATGACTCCCGAGGCAGTGAGGGACAACTGGGAGAAGATCTGTGACTTCAGC
AATGCCAGCAAGCCGCAGACCATTCAAGAATCAACAGGTGGTATAGTCGAAGTTTTACATAAGGTAGATT
CAGAAGGAATCTCACCAAACCGTACCAGTCACGCGGCACCTGCAGCCACGTCAGGATTCGTTGGTGCTGT
TGGCCATAAACTTCCTTCATTTTCTTCTTCGTATACGGAGCTGCAGAGTATTATGTATGCCCTCGGAGTG
GGAGCGTCAGTCAAAAATCCAAAGGATTTGAAGTTTGTTTATGAAGGCAGTGCTGACTTCTCCTGTTTGC
CCACCTTCGGAGTCATTGTCGCTCAGAAGTCCATGATGAATGGAGGGCTGGCAGAGGTTCCTGGGCTGTC
ATTCAACTTTGCAAAGGCTCTTCACGGGGAGCAGTACTTGGAGCTGTATAAGCCACTTCCTCGATCAGGA
GAATTAAAATGTGAAGCAGTTATTGCTGACATCCTGGATAAAGGCTCTGGCGTAGTGATTGTTATGGACG
TCTATTCTTATTCTGGGAAGGAACTTATATGCTATAATCAGTTCTCTGTCTTTGTTGTTGGCTCTGGGGG
CTTTGGTGGAAAACGGACATCAGAAAAACTCAAAGCAGCTGTAGCTGTACCAAATCGACCTCCAGATGCT
GTACTGAGAGATGCCACCTCACTGAATCAGGCCGCGCTGTACCGCCTCAGCGGAGACTGGAATCCTCTAC
ACATTGACCCGGACTTTGCGAGCGTTGCCGGTTTTGAGAAGCCCATATTACATGGACTATGTACCTTTGG
ATTTTCTGCAAGGCATGTTTTACAGCAGTTTGCAGATAATGATGTATCAAGATTCAAGGCGATTAAGGTT
CGTTTTGCCAAACCAGTGTATCCAGGACAGACTCTACAAACTGAGATGTGGAAGGAAGGAAACAGAATTC
ATTTTCAAACCAAGGTCCACGAGACTGGAGATGTTGTCATTTCAAATGCGTACGTGGATCTCGTGCCTGC
ATCTGGAGTTTCAACCCAGACACCTTCAGAGGGTGGAGAGCTCCAGAGTGCTCTTGTGTTTGGGGAGATA
GGCCGCCGCCTCAAGAGTGTTGGCCGTGAGGTGGTAAAGAAAGCGAATGCTGTGTTTGAATGGCATATCA
CGAAAGGTGGGACTGTTGCAGCCAAGTGGACCATTGACCTGAAGAGCGGCTCAGGGGAGGTGTACCAAGG
CCCCGCAAAGGGCTCTGCTGATGTGACCATCATCATTTCCGATGAGGATTTTATGGAAGTGGTCTTCGGC
AAGCTTGACCCACAGAAGGCCTTCTTCAGTGGCAGGCTGAAGGCCAGAGGGAACATCATGCTGAGCCAGA
AACTACAGATGATTCTTAAAGACTATGCCAAGCTCTGA

Translation (735 aa):
MASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVIVNDLGGDFKGIGKGSSAADKVVAEIRRKGGKAV
ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIHRVHLRGSFQVTRAAWDHMKK
QNYGRILMTSSASGIYGNFGQANYSAAKLGILGLCNTLAIEGRKNNIHCNTIAPNAGSRMTETVLPEDLV
EALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPEAVRDNWEKICDFS
NASKPQTIQESTGGIVEVLHKVDSEGISPNRTSHAAPAATSGFVGAVGHKLPSFSSSYTELQSIMYALGV
GASVKNPKDLKFVYEGSADFSCLPTFGVIVAQKSMMNGGLAEVPGLSFNFAKALHGEQYLELYKPLPRSG
ELKCEAVIADILDKGSGVVIVMDVYSYSGKELICYNQFSVFVVGSGGFGGKRTSEKLKAAVAVPNRPPDA
VLRDATSLNQAALYRLSGDWNPLHIDPDFASVAGFEKPILHGLCTFGFSARHVLQQFADNDVSRFKAIKV
RFAKPVYPGQTLQTEMWKEGNRIHFQTKVHETGDVVISNAYVDLVPASGVSTQTPSEGGELQSALVFGEI
GRRLKSVGREVVKKANAVFEWHITKGGTVAAKWTIDLKSGSGEVYQGPAKGSADVTIIISDEDFMEVVFG
KLDPQKAFFSGRLKARGNIMLSQKLQMILKDYAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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