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Report for CCDS29278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29278.1 Public Mus musculus 18 Slc6a7 23 108 98 CCDS HistoryNCBI Gene:240332Re-query CCDS DB by CCDS ID:29278.1Re-query CCDS DB by GeneID:240332See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025520.9 ENSMUSP00000025520.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025520.9Link to Ensembl Protein Viewer:ENSMUSP00000025520.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025520Re-query CCDS DB by Protein ID:ENSMUSP00000025520
Original member NCBI NM_201353.1 NP_958741.1 Updated not alive Link to Nucleotide Sequence:NM_201353.1Link to Protein Sequence:NP_958741.1Re-query CCDS DB by Nucleotide ID:NM_201353Re-query CCDS DB by Protein ID:NP_958741
Current member NCBI NM_201353.2 NP_958741.1 Accepted alive Link to Nucleotide Sequence:NM_201353.2Link to Protein Sequence:NP_958741.1Re-query CCDS DB by Nucleotide ID:NM_201353Re-query CCDS DB by Protein ID:NP_958741Link to BLAST:NP_958741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958741.1 637 Q6PGE7 637 100% 0 0

Chromosomal Locations for CCDS 29278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 60996619 60996831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61000422 61000589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61001292 61001392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61001570 61001669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61002123 61002254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61002326 61002438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61003241 61003365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61003487 61003590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61004389 61004523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61005712 61005850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61007375 61007609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61007716 61007847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61009422 61009605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61013977 61014009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGAAGAAGCTCCAAGAAGCTCACCTCCGCAAGCCCATCACCCCAGACCTGCTGATGACTCCCAGTGACC
AGGGCGATGTGGACCTGGATGTAGACTTCGCAGCAGACAGGGGCAACTGGACGGGCAAGCTGGACTTCCT
GCTGTCCTGCATCGGCTACTGCGTGGGCTTGGGAAATGTCTGGCGCTTTCCCTACCGAGCCTACACCAAT
GGAGGCGGAGCCTTCCTCGTGCCCTACTTCCTCATGCTGGCCATCTGTGGAATCCCCCTCTTCTTTCTTG
AGCTCTCCCTGGGCCAGTTCTCCAGCCTGGGACCCCTGGCTGTCTGGAAAATCAGCCCTCTCTTTAAAGG
TGCAGGTGCGGCCATGCTGCTCATTGTAGGCCTGGTGGCCATTTACTACAACATGATTATCGCCTACGTC
CTCTTCTACCTCTTCGCCTCCCTCACCAGCAATTTGCCCTGGGAGCACTGTGGCAACTGGTGGAACACGG
AGCTTTGCCTGGAGCACAGAGGCCCCAAGAGTGGTAATGGGGTGCTGCCTCTTAACCTCAGCAGCACCGT
CAGCCCCAGTGAGGAGTACTGGAGCCGCTATGTCCTGCACATACAGGGCAGCCAGGGCATCGGCCGACCG
GGGGAGATTCGCTGGAACCTCTGCCTCTGCCTGCTGCTGGCCTGGGTCATCGTGTTCCTCTGTATCTTGA
AGGGGGTGAAGTCCTCGGGCAAGGTGGTGTATTTCACGGCCACCTTTCCCTACCTCATCCTCCTCATGCT
GCTGGTTCGAGGAGTGACCCTTCCCGGGGCCTGGAAGGGCATCCAGTTCTATCTCACCCCCCAGTTCCAC
CACCTGTTATCTTCAAAGGTGTGGATTGAAGCTGCTCTTCAGATCTTTTATTCTCTAGGAGTGGGCTTTG
GGGGTCTCCTCACCTTTGCTTCCTACAACACATTCCATCAGAACATCTACAGAGACACCTTCATTGTCAC
TCTGGGCAATGCCATCACTAGCATCCTGGCTGGCTTTGCTATCTTCTCGGTGCTGGGCTACATGTCTCAG
GAGCTGGGTGTGCCCGTGGACCAAGTGGCCAAAGCAGGCCCTGGCCTGGCCTTTGTTGTCTACCCACAGG
CCATGACCATGTTGCCTCTGTCACCTTTCTGGTCCTTCCTCTTCTTCTTCATGCTTCTGACGCTTGGCCT
GGATAGCCAGTTTGCCTTTCTAGAAACCATAGTGACTGCAGTGACTGATGAGTTCCCATACTACCTGCGG
CCCAAGAAGGCAGTGTTCTCAGGACTCATCTGTGTGGCCATGTACCTGATGGGACTGATTCTCACCACTG
ATGGGGGTATGTACTGGCTGGTCCTTTTGGATGACTACAGCGCCAGCTTCGGACTCATGGTGGTGGTGAT
CACCACGTGCCTCGCTGTCACCCGGGTATATGGCATCCAGCGGTTCTGCCGAGATATCCACATGATGCTA
GGCTTCAAGCCAGGCCTCTACTTCAGGGCCTGCTGGCTGTTTCTGTCTCCAGCTACACTCTTGGCCTTGC
TGGTGTACAGCATCGTCAAGTACCAGCCCTCAGAATATGGCAGCTATCGCTTCCCCGCCTGGGCCGAGCT
GCTAGGCATCCTGATGGGTCTGCTCTCTTGCCTCATGATCCCAGCTGGTATGCTGGTAGCTGTGCTTCGA
GAGGAGGGCTCGCTCTGGGAGAGACTTCAGCAAGCCAGTCGGCCTGCTATGGACTGGGGCCCATCTCTGG
AAGAGAACCGGACGGGAATGTATGTGGCCACACTGGCTGGGAGCCAGTCACCAAAGCCACTGATGGTACA
CATGCGCAAATACGGGGGCATCACCAGCTTCGAGAACACGGCCATTGAGGTGGACCGTGAGATCGCAGAG
GAGGAGGAGGAGTCTATGATGTGA

Translation (637 aa):
MKKLQEAHLRKPITPDLLMTPSDQGDVDLDVDFAADRGNWTGKLDFLLSCIGYCVGLGNVWRFPYRAYTN
GGGAFLVPYFLMLAICGIPLFFLELSLGQFSSLGPLAVWKISPLFKGAGAAMLLIVGLVAIYYNMIIAYV
LFYLFASLTSNLPWEHCGNWWNTELCLEHRGPKSGNGVLPLNLSSTVSPSEEYWSRYVLHIQGSQGIGRP
GEIRWNLCLCLLLAWVIVFLCILKGVKSSGKVVYFTATFPYLILLMLLVRGVTLPGAWKGIQFYLTPQFH
HLLSSKVWIEAALQIFYSLGVGFGGLLTFASYNTFHQNIYRDTFIVTLGNAITSILAGFAIFSVLGYMSQ
ELGVPVDQVAKAGPGLAFVVYPQAMTMLPLSPFWSFLFFFMLLTLGLDSQFAFLETIVTAVTDEFPYYLR
PKKAVFSGLICVAMYLMGLILTTDGGMYWLVLLDDYSASFGLMVVVITTCLAVTRVYGIQRFCRDIHMML
GFKPGLYFRACWLFLSPATLLALLVYSIVKYQPSEYGSYRFPAWAELLGILMGLLSCLMIPAGMLVAVLR
EEGSLWERLQQASRPAMDWGPSLEENRTGMYVATLAGSQSPKPLMVHMRKYGGITSFENTAIEVDREIAE
EEEESMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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