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Report for CCDS29278.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
29278.1 |
Public |
Mus musculus |
18 |
Slc6a7 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:240332](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:29278.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:240332](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 18 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 29278.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000025520.9 |
ENSMUSP00000025520.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000025520.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000025520.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000025520](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000025520](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_201353.1 |
NP_958741.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_201353.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_958741.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_201353](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_958741](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_201353.2 |
NP_958741.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_201353.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_958741.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_201353](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_958741](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_958741.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_958741.1 |
637 |
Q6PGE7 |
637 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 29278.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1914 nt): ATGAAGAAGCTCCAAGAAGCTCACCTCCGCAAGCCCATCACCCCAGACCTGCTGATGACTCCCAGTGACC AGGGCGATGTGGACCTGGATGTAGACTTCGCAGCAGACAGGGGCAACTGGACGGGCAAGCTGGACTTCCT GCTGTCCTGCATCGGCTACTGCGTGGGCTTGGGAAATGTCTGGCGCTTTCCCTACCGAGCCTACACCAAT GGAGGCGGAGCCTTCCTCGTGCCCTACTTCCTCATGCTGGCCATCTGTGGAATCCCCCTCTTCTTTCTTG AGCTCTCCCTGGGCCAGTTCTCCAGCCTGGGACCCCTGGCTGTCTGGAAAATCAGCCCTCTCTTTAAAGG TGCAGGTGCGGCCATGCTGCTCATTGTAGGCCTGGTGGCCATTTACTACAACATGATTATCGCCTACGTC CTCTTCTACCTCTTCGCCTCCCTCACCAGCAATTTGCCCTGGGAGCACTGTGGCAACTGGTGGAACACGG AGCTTTGCCTGGAGCACAGAGGCCCCAAGAGTGGTAATGGGGTGCTGCCTCTTAACCTCAGCAGCACCGT CAGCCCCAGTGAGGAGTACTGGAGCCGCTATGTCCTGCACATACAGGGCAGCCAGGGCATCGGCCGACCG GGGGAGATTCGCTGGAACCTCTGCCTCTGCCTGCTGCTGGCCTGGGTCATCGTGTTCCTCTGTATCTTGA AGGGGGTGAAGTCCTCGGGCAAGGTGGTGTATTTCACGGCCACCTTTCCCTACCTCATCCTCCTCATGCT GCTGGTTCGAGGAGTGACCCTTCCCGGGGCCTGGAAGGGCATCCAGTTCTATCTCACCCCCCAGTTCCAC CACCTGTTATCTTCAAAGGTGTGGATTGAAGCTGCTCTTCAGATCTTTTATTCTCTAGGAGTGGGCTTTG GGGGTCTCCTCACCTTTGCTTCCTACAACACATTCCATCAGAACATCTACAGAGACACCTTCATTGTCAC TCTGGGCAATGCCATCACTAGCATCCTGGCTGGCTTTGCTATCTTCTCGGTGCTGGGCTACATGTCTCAG GAGCTGGGTGTGCCCGTGGACCAAGTGGCCAAAGCAGGCCCTGGCCTGGCCTTTGTTGTCTACCCACAGG CCATGACCATGTTGCCTCTGTCACCTTTCTGGTCCTTCCTCTTCTTCTTCATGCTTCTGACGCTTGGCCT GGATAGCCAGTTTGCCTTTCTAGAAACCATAGTGACTGCAGTGACTGATGAGTTCCCATACTACCTGCGG CCCAAGAAGGCAGTGTTCTCAGGACTCATCTGTGTGGCCATGTACCTGATGGGACTGATTCTCACCACTG ATGGGGGTATGTACTGGCTGGTCCTTTTGGATGACTACAGCGCCAGCTTCGGACTCATGGTGGTGGTGAT CACCACGTGCCTCGCTGTCACCCGGGTATATGGCATCCAGCGGTTCTGCCGAGATATCCACATGATGCTA GGCTTCAAGCCAGGCCTCTACTTCAGGGCCTGCTGGCTGTTTCTGTCTCCAGCTACACTCTTGGCCTTGC TGGTGTACAGCATCGTCAAGTACCAGCCCTCAGAATATGGCAGCTATCGCTTCCCCGCCTGGGCCGAGCT GCTAGGCATCCTGATGGGTCTGCTCTCTTGCCTCATGATCCCAGCTGGTATGCTGGTAGCTGTGCTTCGA GAGGAGGGCTCGCTCTGGGAGAGACTTCAGCAAGCCAGTCGGCCTGCTATGGACTGGGGCCCATCTCTGG AAGAGAACCGGACGGGAATGTATGTGGCCACACTGGCTGGGAGCCAGTCACCAAAGCCACTGATGGTACA CATGCGCAAATACGGGGGCATCACCAGCTTCGAGAACACGGCCATTGAGGTGGACCGTGAGATCGCAGAG GAGGAGGAGGAGTCTATGATGTGA
Translation (637 aa): MKKLQEAHLRKPITPDLLMTPSDQGDVDLDVDFAADRGNWTGKLDFLLSCIGYCVGLGNVWRFPYRAYTN GGGAFLVPYFLMLAICGIPLFFLELSLGQFSSLGPLAVWKISPLFKGAGAAMLLIVGLVAIYYNMIIAYV LFYLFASLTSNLPWEHCGNWWNTELCLEHRGPKSGNGVLPLNLSSTVSPSEEYWSRYVLHIQGSQGIGRP GEIRWNLCLCLLLAWVIVFLCILKGVKSSGKVVYFTATFPYLILLMLLVRGVTLPGAWKGIQFYLTPQFH HLLSSKVWIEAALQIFYSLGVGFGGLLTFASYNTFHQNIYRDTFIVTLGNAITSILAGFAIFSVLGYMSQ ELGVPVDQVAKAGPGLAFVVYPQAMTMLPLSPFWSFLFFFMLLTLGLDSQFAFLETIVTAVTDEFPYYLR PKKAVFSGLICVAMYLMGLILTTDGGMYWLVLLDDYSASFGLMVVVITTCLAVTRVYGIQRFCRDIHMML GFKPGLYFRACWLFLSPATLLALLVYSIVKYQPSEYGSYRFPAWAELLGILMGLLSCLMIPAGMLVAVLR EEGSLWERLQQASRPAMDWGPSLEENRTGMYVATLAGSQSPKPLMVHMRKYGGITSFENTAIEVDREIAE EEEESMM
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