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Report for CCDS29360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29360.1 Public Mus musculus 18 Slc14a1 23 108 98 CCDS HistoryNCBI Gene:108052Re-query CCDS DB by CCDS ID:29360.1Re-query CCDS DB by GeneID:108052See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091813.11 ENSMUSP00000089421.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091813.11Link to Ensembl Protein Viewer:ENSMUSP00000089421.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091813Re-query CCDS DB by Protein ID:ENSMUSP00000089421
Original member Current member EBI ENSMUST00000160639.1 ENSMUSP00000125367.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160639.1Link to Ensembl Protein Viewer:ENSMUSP00000125367.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160639Re-query CCDS DB by Protein ID:ENSMUSP00000125367
Original member Current member NCBI NM_001171011.1 NP_001164482.1 Accepted alive Link to Nucleotide Sequence:NM_001171011.1Link to Protein Sequence:NP_001164482.1Re-query CCDS DB by Nucleotide ID:NM_001171011Re-query CCDS DB by Protein ID:NP_001164482Link to BLAST:NP_001164482.1
Original member Current member NCBI NM_028122.4 NP_082398.1 Accepted alive Link to Nucleotide Sequence:NM_028122.4Link to Protein Sequence:NP_082398.1Re-query CCDS DB by Nucleotide ID:NM_028122Re-query CCDS DB by Protein ID:NP_082398Link to BLAST:NP_082398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164482.1 384 Q8VHL0-1 384 100% 0 0
NP_082398.1 384 Q8VHL0-1 384 100% 0 0

Chromosomal Locations for CCDS 29360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 78102395 78102568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78104030 78104079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78109592 78109726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78109909 78110056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78111354 78111546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78113666 78113794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78115721 78115910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78116373 78116508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGGAAGATAGTCCCACCATGGTTAAAGTAGACCGGGGTGAAAACCAGATTTTATCATGCCGCGGGAGAA
GGTGTGGCTTCAAAGTACTTGGCTACGTCACGGGTGACATGAAGGAATTCGCCAACTGGCTGAAAGACAA
ACCCGTGGTGCTCCAGTTCATGGACTGGATACTTCGTGGCATATCCCAGGTGGTGTTTGTCAGCAACCCC
ATCAGTGGAATCCTGATTCTGGTGGGACTTCTGGTCCAGAACCCCTGGTGGGCTCTCTGTGGCTGTGTAG
GAACTGTGGTCTCCACTCTGACAGCCCTCTTGCTTAGCCAAGACAGATCGGCGATAGCAGCGGGGCTCCA
AGGTTACAATGCCACCCTGGTAGGCATCCTCATGGCTGTCTTCTCAAACAAGGGCGACTATTTCTGGTGG
CTGATATTCCCTGTATCTGCTATGTCTATGACTTGCCCGGTTTTCTCGAGCGCGTTGAGCTCCGTGCTCA
GCAAGTGGGACCTGCCCGTCTTCACTCTCCCTTTCAACATGGCGTTGTCGATGTACCTGTCAGCCACAGG
ACACTACAATACGTTTTTCCCAAGTAAACTCTTCACACCTGTCAGCTCCGTGCCCAACATCACGTGGTCT
GAGCTCAGCGCCCTGGAGCTATTGAAGTCTCTTCCGGTGGGAGTCGGTCAGATATATGGCTGTGACAACC
CGTGGACAGGCGGCATTTTCCTATGTGCTATCCTGCTCTCCTCCCCACTCATGTGCCTGCACGCTGCTAT
TGGATCGTTGCTGGGTGTCATCGCGGGACTCAGTCTTGCAGCTCCATTTGAAGACATCTACTTTGGGCTC
TGGGGTTTCAACAGCTCTCTGGCCTGCATTGCAATTGGAGGGATGTTCATGGCACTCACCTGGCAGACCC
ACCTCCTGGCTCTTGCCTGTGCCCTGTTCACTGCCTACTTCGGAGCCTGTATGGCACACCTGATGGCTGT
GGTTCACCTGCCAGCTTGTACCTGGTCCTTCTGTTTGGCCACACTACTCTTTCTCTTGCTGACCACGAAA
AATCCCAACATCTACAGGATGCCCCTCAGCAAAGTTACCTACTCTGAGGAGAACCGCATCTTCTACCTCC
AAAACAAGAAAAGGATGGTTGAAAGCCCCCTGTAA

Translation (384 aa):
MEDSPTMVKVDRGENQILSCRGRRCGFKVLGYVTGDMKEFANWLKDKPVVLQFMDWILRGISQVVFVSNP
ISGILILVGLLVQNPWWALCGCVGTVVSTLTALLLSQDRSAIAAGLQGYNATLVGILMAVFSNKGDYFWW
LIFPVSAMSMTCPVFSSALSSVLSKWDLPVFTLPFNMALSMYLSATGHYNTFFPSKLFTPVSSVPNITWS
ELSALELLKSLPVGVGQIYGCDNPWTGGIFLCAILLSSPLMCLHAAIGSLLGVIAGLSLAAPFEDIYFGL
WGFNSSLACIAIGGMFMALTWQTHLLALACALFTAYFGACMAHLMAVVHLPACTWSFCLATLLFLLLTTK
NPNIYRMPLSKVTYSEENRIFYLQNKKRMVESPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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