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Report for CCDS29361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29361.1 Public Mus musculus 18 Slc14a2 23 108 98 CCDS HistoryNCBI Gene:27411Re-query CCDS DB by CCDS ID:29361.1Re-query CCDS DB by GeneID:27411See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025434.13 ENSMUSP00000025434.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025434.13Link to Ensembl Protein Viewer:ENSMUSP00000025434.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025434Re-query CCDS DB by Protein ID:ENSMUSP00000025434
Original member Current member EBI ENSMUST00000237674.1 ENSMUSP00000157851.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237674.1Link to Ensembl Protein Viewer:ENSMUSP00000157851.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237674Re-query CCDS DB by Protein ID:ENSMUSP00000157851
Original member NCBI NM_207651.3 NP_997534.2 Updated not alive Link to Nucleotide Sequence:NM_207651.3Link to Protein Sequence:NP_997534.2Re-query CCDS DB by Nucleotide ID:NM_207651Re-query CCDS DB by Protein ID:NP_997534
Current member NCBI NM_207651.4 NP_997534.2 Accepted alive Link to Nucleotide Sequence:NM_207651.4Link to Protein Sequence:NP_997534.2Re-query CCDS DB by Nucleotide ID:NM_207651Re-query CCDS DB by Protein ID:NP_997534Link to BLAST:NP_997534.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997534.2 930 Q8R4T9-1 930 99.5699% 0 4

Chromosomal Locations for CCDS 29361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 78146940 78147140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78150394 78150443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78153998 78154132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78155507 78155654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78157178 78157370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78158237 78158365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78158977 78159166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78159864 78160023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78160758 78160840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78163096 78163221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78183461 78183635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78184123 78184172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78184546 78184680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78185739 78185886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78192091 78192283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78195726 78195854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78205702 78205891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78206894 78207074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78208918 78209094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGAGTGACCACCACCCCCTGAAGGAGATGTCTGACAGCAACAGCAGCCCTCTCTTGCCAGAGCCTCTTT
CCAGCAGATACAAATTGTATGAGTCAGAGCTAAGCAGCCCTACCTGGCCTTCAAGCTCCCAGGATACACA
CCCAGCCCTTCCCCTGCTGGAAATGCCGGAAGAAAAGGATCTCCGCTCATCAGATGAAGACAGCCACATA
GTGAAGATTGAAAAACCCAATGAGAGGAATAAAAGGAGAGAAAGTGAGGTGTCCCGCCGGGCTTCTGCGG
GCCGGGGAGGCTTCAGCCTCTTCCAAGCCGTGAGCTATCTCACTGGCGACATGAAGGAATGCAAGAACTG
GCTGAAAGATAAGCCCCTGGTCCTACAGTTCCTAGACTGGGTCCTTCGGGGAGCAGCTCAGGTGATGTTT
GTCAACAACCCCATTAGTGGGCTCATCATCTTCATAGGGCTCCTAATCCAGAATCCCTGGTGGACGATTG
CTGGGACACTGGGGACAGTGGCTTCAACCTTGGCTGCCCTTGCCTTAAGCCAGGACAGGTCAGCCATCGC
CTCCGGACTCCATGGCTACAACGGGATGCTGGTGGGACTGCTGATGGCTGTCTTCTCGGAGAAGTTAGAC
TACTACTGGTGGCTTCTGTTTCCTGTGACCTTCACATCCATGGCCTGCCCCATTATTTCTAGTGCCTTGA
GTACCATCTTCGCCAAGTGGGACCTGCCCGTCTTCACACTGCCCTTCAACATTGCCTTAACACTGTACCT
GGCAGCTACGGGCCACTACAACCTTTTCTTCCCCACCACGCTCATCAAGCCTGCGTCTGCAGCTCCCAAT
ATCACCTGGACAGAGATTGAAATGCCTTTGCTGTTACAAACCATCCCTGTTGGGGTCGGCCAGGTCTACG
GCTGTGACAACCCCTGGACAGGTGGCATGATCCTGGTGGCTCTGTTTATCTCCTCCCCACTCATCTGCTT
ACATGCAGCCATAGGGTCAATCGTGGGGCTGCTAGCAGCATTGACTGTGGCCACTCCCTTTGAGACGATC
TACCTGGGCCTTTGGAGCTACAACTGTGTCCTCTCCTGCATTGCCATTGGCGGCATGTTCTACGCACTCA
CCTGGCAGACACACCTGCTGGCACTTGTCTGTGCCCTGTTCTGTGCATACATGGGAGCTGCCCTCTCCAA
TACAATGGCAGTGGTTGGCGTGCCCTCAGGCACCTGGGCCTTCTGTCTCTCCACCCTCACCTTCCTCCTC
CTCACAAGCAACAACACTGGCATCTACAAGCTCCCACTCAGCAAAGTCACCTACCCGGAGGCCAACCGCA
TCTACTTCCTGACAGTGAGACGCAGTGAAGAGGAGAAGTCCCCCAATGGTGGCAGTGGAGAGCAGTCACA
CGGATCAGGCCAGTGGAAGGCAGAAGAGAGCTCTGAGACCGTGCTCCCCAGGCGTAGGAGTGTGTTCCAC
ATCGAGTGGTCATCCATCCGGAGGAGGAGCAAAGTGTTTGGAAAAGGCGAACACCAAGAGAGGCAAACCA
AAGAGCCACTGCCCTGCCCGTATCGGAAGCCCACAGTGGAGCTCTTTGACCTGGACACCATGGAGGAGAG
CACTGAGATAAAGGTGGAAGCCAACACAGCCAGGACTTCCTGGATTCAGAGCTCCATGGTCGCTGGGGGG
AAGAGAGTCAGCAAAGCCCTCAGCTACATCACAGGAGAGATGAAGGAATGCGGCGAGGGACTTAAAGATA
AATCTCCAGTGTTCCAGTTTCTTGACTGGGTGCTCCGGGGCATGTCTCAGGTGATGTTTGTAAACAACCC
TCTCAGCGGCATCCTCATCGTCCTTGGCCTCTTCGTGCAGAATCCCTGGTGGGCTATCTTGGGTTGCTTG
GGCACTGTCATGTCCACCCTGACTGCCCTCATCCTGAGCCAGGACAAGTCAGCCATTGCAGCAGGACTCC
ATGGCTACAATGGGGTGCTTGTGGGGCTCCTGATGGCCGTGTTCTCGGACAAGGGCAATTACTACTGGTG
GCTGCTGCTTCCTGTCATTGTCATGTCCATGACTTGCCCCATCCTTTCCAGTGCCCTGAGCACCGTCTTC
AGCAAGTGGGACCTCCCAGTCTTCACACTGCCCTTCAACATCGCCGTGACCCTGTACCTGGCAGCGACGG
GCCACCACAATCTCTTCTTCCCCACGACGCTGCTACAGCCTACAACCACTCCACCCAACATCACCTGGTC
AGATATCCAAGTGTCTTTGCTTCTGAGAGCCATCCCGGTTGGAATCGGCCAAGTGTACGGGTGTGACAAC
CCCTGGACTGGAGGCATCTTCCTGGTCGCTCTGTTCATCTCTTCGCCTCTCATTTGCTTGCATGCTGCCA
TTGGATCCACCATAGGGATGTTAGCAGCACTCAGCATTGCCACACCATTTGACTCCATCTACTTCGGCCT
GTGTGGCTTCAACAGCACCCTGGCCTGCATCGCCATTGGTGGCATGTTCTACGTCATCACCTGGCAGACC
CACCTGCTCGCCATTGCCTGTGCCCTGTTTGCAGCCTACCTGGGTGCTGCCCTGGCCAACATGCTGTCTG
TGTTTGGATTACCACCCTGCACCTGGCCCTTCTGCCTCTCGGCGCTCACCTTCCTCCTCCTGACAAGCAA
CAACCCTGCCATCTATAAGCTGCCTCTCAGCAAAGTCACCTACCCAGAGGCCAACCGCATCTACTTCCTG
TCCCAGGAAAAAAACAGAAGGGCATCAACGATAACTAAGTACCAGGCCTACGACGTCTCCTAA

Translation (930 aa):
MSDHHPLKEMSDSNSSPLLPEPLSSRYKLYESELSSPTWPSSSQDTHPALPLLEMPEEKDLRSSDEDSHI
VKIEKPNERNKRRESEVSRRASAGRGGFSLFQAVSYLTGDMKECKNWLKDKPLVLQFLDWVLRGAAQVMF
VNNPISGLIIFIGLLIQNPWWTIAGTLGTVASTLAALALSQDRSAIASGLHGYNGMLVGLLMAVFSEKLD
YYWWLLFPVTFTSMACPIISSALSTIFAKWDLPVFTLPFNIALTLYLAATGHYNLFFPTTLIKPASAAPN
ITWTEIEMPLLLQTIPVGVGQVYGCDNPWTGGMILVALFISSPLICLHAAIGSIVGLLAALTVATPFETI
YLGLWSYNCVLSCIAIGGMFYALTWQTHLLALVCALFCAYMGAALSNTMAVVGVPSGTWAFCLSTLTFLL
LTSNNTGIYKLPLSKVTYPEANRIYFLTVRRSEEEKSPNGGSGEQSHGSGQWKAEESSETVLPRRRSVFH
IEWSSIRRRSKVFGKGEHQERQTKEPLPCPYRKPTVELFDLDTMEESTEIKVEANTARTSWIQSSMVAGG
KRVSKALSYITGEMKECGEGLKDKSPVFQFLDWVLRGMSQVMFVNNPLSGILIVLGLFVQNPWWAILGCL
GTVMSTLTALILSQDKSAIAAGLHGYNGVLVGLLMAVFSDKGNYYWWLLLPVIVMSMTCPILSSALSTVF
SKWDLPVFTLPFNIAVTLYLAATGHHNLFFPTTLLQPTTTPPNITWSDIQVSLLLRAIPVGIGQVYGCDN
PWTGGIFLVALFISSPLICLHAAIGSTIGMLAALSIATPFDSIYFGLCGFNSTLACIAIGGMFYVITWQT
HLLAIACALFAAYLGAALANMLSVFGLPPCTWPFCLSALTFLLLTSNNPAIYKLPLSKVTYPEANRIYFL
SQEKNRRASTITKYQAYDVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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