NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29382.1 Public Mus musculus 18 Cndp1 23 108 98 CCDS HistoryNCBI Gene:338403Re-query CCDS DB by CCDS ID:29382.1Re-query CCDS DB by GeneID:338403See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29382.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070139.8 ENSMUSP00000069699.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070139.8Link to Ensembl Protein Viewer:ENSMUSP00000069699.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070139Re-query CCDS DB by Protein ID:ENSMUSP00000069699
Original member Current member NCBI NM_177450.4 NP_803233.2 Accepted alive Link to Nucleotide Sequence:NM_177450.4Link to Protein Sequence:NP_803233.2Re-query CCDS DB by Nucleotide ID:NM_177450Re-query CCDS DB by Protein ID:NP_803233Link to BLAST:NP_803233.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803233.2 492 Q8BUG2 492 99.7967% 0 1

Chromosomal Locations for CCDS 29382.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 84611588 84611684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84612751 84612898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84618154 84618295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84619516 84619680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84622152 84622312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84628796 84628880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84631886 84632086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84634552 84634640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84636047 84636209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84637815 84637964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84640201 84640278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGTTCTCTTCGGCACACTCTGGGCTGTTGGAGAAGCTCTTCCACTACATAGACCTCCACCAGGATGAGT
TCGTGCAGACACTGAAGGAGTGGGTGGCCATTGAGAGTGATTCTGTGCAGCCTGTGCCTCGTCTCAGACA
GAAGCTCTTCCAGATGATGGCCTTGGCTGCAGACAAACTCCGGAACCTGGGAGCTGGGGTGGAGTCCATA
GACTTGGGTTCTCAGCAGATGCCTGATGGTCAGAGTCTCCCCATACCTCCTATCCTATTGGCTGAGCTGG
GAAGTGATCCCGAGAAGCCAACTGTATGCTTCTATGGGCACCTGGACGTGCAGCCAGCTCAGAAGGACGA
CGGGTGGCTCACGGACCCCTACACACTGACAGAGGTGGATGGGAAACTGTATGGACGGGGAGCAACAGAC
AACAAGGGCCCCGTCTTGGCTTGGATCAATGCCGTGAGCACCTTCAGAGCTCTGCAGCAGGATCTTCCCG
TGAACATCAAACTCATCCTGGAGGGAATGGAAGAAGCCGGTTCCATCGCCCTGGAGGAACTCGTCATGAG
AGAAAAGGACCACTTCTTCTCCAGTGTGGACTACATTGTGATTTCAGACAACCTGTGGCTCAGCCAGAGG
AAACCTGCACTCACTTATGGAACCCGGGGGAACTGCTACTTCACGGTGGAGGTGAAGTGTAGAGATCAAG
ATTTCCACTCAGGAACCTTTGGTGGCATCCTCAACGAACCAATGGCTGACTTGGTTGCTCTTCTAGGTAG
CCTGGTGGATTCATCAGGCCACATCCTAATTCCTGGAATCTATGATCAAATGGCACCTATTACAGAGGGA
GAAAAGACAATGTATAAAAACATTGATATGGACCTAGAAGAATACCAGAACATCAACCAAGTTGAGAAAT
TTCTGTTTGATACCAAGGAGGAACTTCTGATGCACCTGTGGAGGTATCCGTCTCTCTCCATCCATGGCAT
CGAGGGTGCCTTTGATGAGCCTGGAACTAAAACAGTCATTCCCGGCCGAGTCCTAGGGAAATTTTCAATC
CGTCTAGTCCCTACCATGTCTCCGTCTGTGGTGGAGAAACAGGTAACTCAGCATCTCGAAGCTGTCTTCT
CTAAAAGGAATAGTTTCAACAAGATGGCCGTTTCTATGGTCCTAGGACTCCACCCATGGACTGCAAACGT
CAATGATACTCAGTACCTTGCAGCACAGAGAACCATCAAAACAGTGTTTGGAGTTAATCCTGACATGATC
CGGGATGGGTCAACCATTCCAATTGCCAAAATATTCCAGGCTATCACACAAAAGAGTGTGATGATGCTCC
CACTGGGAGCTGTGGACGATGGAGAGCACTCTCAGAATGAGAAGATCAACAGGTGGAACTACATACAGGG
GTCGAAATTATTCGCTGCCTTTTTCCTGGAGTTGTCAAAACAGCATTCAGGACACCAGATGCCTTCCAGT
GTCTACTGA

Translation (492 aa):
MFSSAHSGLLEKLFHYIDLHQDEFVQTLKEWVAIESDSVQPVPRLRQKLFQMMALAADKLRNLGAGVESI
DLGSQQMPDGQSLPIPPILLAELGSDPEKPTVCFYGHLDVQPAQKDDGWLTDPYTLTEVDGKLYGRGATD
NKGPVLAWINAVSTFRALQQDLPVNIKLILEGMEEAGSIALEELVMREKDHFFSSVDYIVISDNLWLSQR
KPALTYGTRGNCYFTVEVKCRDQDFHSGTFGGILNEPMADLVALLGSLVDSSGHILIPGIYDQMAPITEG
EKTMYKNIDMDLEEYQNINQVEKFLFDTKEELLMHLWRYPSLSIHGIEGAFDEPGTKTVIPGRVLGKFSI
RLVPTMSPSVVEKQVTQHLEAVFSKRNSFNKMAVSMVLGLHPWTANVNDTQYLAAQRTIKTVFGVNPDMI
RDGSTIPIAKIFQAITQKSVMMLPLGAVDDGEHSQNEKINRWNYIQGSKLFAAFFLELSKQHSGHQMPSS
VY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH