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Report for CCDS29406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29406.1 Public Mus musculus 19 Acy3 23 108 98 CCDS HistoryNCBI Gene:71670Re-query CCDS DB by CCDS ID:29406.1Re-query CCDS DB by GeneID:71670See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054030.7 ENSMUSP00000050056.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054030.7Link to Ensembl Protein Viewer:ENSMUSP00000050056.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054030Re-query CCDS DB by Protein ID:ENSMUSP00000050056
Original member Current member EBI ENSMUST00000235612.1 ENSMUSP00000158093.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235612.1Link to Ensembl Protein Viewer:ENSMUSP00000158093.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235612Re-query CCDS DB by Protein ID:ENSMUSP00000158093
Original member Current member EBI ENSMUST00000236510.1 ENSMUSP00000158512.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236510.1Link to Ensembl Protein Viewer:ENSMUSP00000158512.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236510Re-query CCDS DB by Protein ID:ENSMUSP00000158512
Original member Current member NCBI NM_001302479.1 NP_001289408.1 Accepted alive Link to Nucleotide Sequence:NM_001302479.1Link to Protein Sequence:NP_001289408.1Re-query CCDS DB by Nucleotide ID:NM_001302479Re-query CCDS DB by Protein ID:NP_001289408Link to BLAST:NP_001289408.1
Original member Current member NCBI NM_001302480.1 NP_001289409.1 Accepted alive Link to Nucleotide Sequence:NM_001302480.1Link to Protein Sequence:NP_001289409.1Re-query CCDS DB by Nucleotide ID:NM_001302480Re-query CCDS DB by Protein ID:NP_001289409Link to BLAST:NP_001289409.1
Original member Current member NCBI NM_001302481.1 NP_001289410.1 Accepted alive Link to Nucleotide Sequence:NM_001302481.1Link to Protein Sequence:NP_001289410.1Re-query CCDS DB by Nucleotide ID:NM_001302481Re-query CCDS DB by Protein ID:NP_001289410Link to BLAST:NP_001289410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289408.1 318 Q91XE4 318 100% 0 0
NP_001289409.1 318 Q91XE4 318 100% 0 0
NP_001289410.1 318 Q91XE4 318 100% 0 0

Chromosomal Locations for CCDS 29406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3987070 3987305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3987731 3987923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3988138 3988231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3988398 3988505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3988606 3988715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3989653 3989868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTCCTCCCTACCTGGGTCCCGGGAGCCCCTGCTCCGTGTGGCTGTGACTGGAGGCACCCACGGGAATG
AGATGTGTGGTGTCTACCTGGCCCGGTACTGGCTACAGAACCCAGGGGAGCTGCAGAGACCCAGCTTCTC
AGCCATGCCGGTTCTGGCCAACCCAGCAGCCACAGCTGCCTGTTGCCGTTACCTGGACCGTGATCTCAAC
CGCTCCTGCACCCTCACCTTCCTTGGTTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCC
GAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCTTTTGACTTTACCCTAGACCTGCACAA
CACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCAC
TACCTACAGCGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCT
TCAGCGTGGAATCTATATCCAAGAATGGAATCTGTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCG
GGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAA
GGCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTG
CAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAGGACCATGACTTTGAGCCACTGAGGCCTGG
TGAACCCATCTTCAAGCTTTTCAGCGGAGAAGACGTACTGTATGAGGGGGACTCCATTGTGTACCCTGTG
TTCATTAATGAGGCTGCCTATTATGAGAAGCACGTGGCATTCCTGAAGTCTGAGAAGATCAGGGTCACAG
TGCCTGCCCTGCTGAGGTTGACCCCCCGCTCCACCCAGACTCCCTAA

Translation (318 aa):
MSSLPGSREPLLRVAVTGGTHGNEMCGVYLARYWLQNPGELQRPSFSAMPVLANPAATAACCRYLDRDLN
RSCTLTFLGSTATPDDPYEVKRARELNQLLGPKGTGQAFDFTLDLHNTTANTGVCLISESNISFNLHLCH
YLQRQNPGMPCRLFLYEPAGTETFSVESISKNGICLEMGPQPQGVLRADLFSRMRALVASILDFIELFNQ
GMDLPAFEMDIYRNLGSVDFPRTADGDLAGTVHPQLQDHDFEPLRPGEPIFKLFSGEDVLYEGDSIVYPV
FINEAAYYEKHVAFLKSEKIRVTVPALLRLTPRSTQTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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