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Report for CCDS29504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29504.1 Public Mus musculus 19 Pygm 23 108 98 CCDS HistoryNCBI Gene:19309Re-query CCDS DB by CCDS ID:29504.1Re-query CCDS DB by GeneID:19309See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035269.14 ENSMUSP00000047564.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035269.14Link to Ensembl Protein Viewer:ENSMUSP00000047564.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035269Re-query CCDS DB by Protein ID:ENSMUSP00000047564
Original member Current member NCBI NM_011224.2 NP_035354.1 Accepted alive Link to Nucleotide Sequence:NM_011224.2Link to Protein Sequence:NP_035354.1Re-query CCDS DB by Nucleotide ID:NM_011224Re-query CCDS DB by Protein ID:NP_035354Link to BLAST:NP_035354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035354.1 842 Q9WUB3 842 100% 0 0

Chromosomal Locations for CCDS 29504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6384479 6384721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6385685 6385786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6385866 6385944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6386024 6386127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6386374 6386505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6388063 6388174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6388267 6388349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6388737 6388880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6389160 6389252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6389456 6389602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6389773 6389936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6390331 6390445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6390940 6391041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6391333 6391480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6392679 6392737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6392848 6392989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6393716 6393923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6397578 6397712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6397866 6397932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6398045 6398194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2529 nt):
ATGTCCAGGCCTCTTTCAGACCAGGATAAGAGAAAGCAAATCAGCGTTCGTGGCTTAGCCGGAGTGGAAA
ATGTGTCGGAGCTAAAAAAGAACTTCAACCGCCACCTGCATTTCACCTTGGTCAAGGATCGCAATGTGGC
TACTCCGAGAGATTACTATTTTGCACTGGCCCACACTGTCCGGGACCACCTCGTGGGACGCTGGATCCGC
ACACAGCAGCATTACTACGAAAAGGACCCCAAGAGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCC
GGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAGCTGGG
CTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTG
GCAGCTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGT
TTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGGCTTCGCTATGG
CAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACC
AGCCAGGGTGCCAAGTGGGTGGACACACAGGTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCT
ATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGA
CTTCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTG
TACCCCAATGATAATTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCA
CCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTT
CGATGCCTTCCCTGATAAGGTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTG
ATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAGGCCTGGGACGTAACAGTGAAGACCTGTG
CCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCT
GCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAACCGGGTGGCGGCTGCATTCCCT
GGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCAC
ACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAAC
CATCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGG
CGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGCGCATTGGTGAGGACTACATCT
CAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAA
AGTGAAACAGGAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCC
AACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACA
TCATCACCTTGTATAACCGCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGG
AGGCAAGGCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTG
GTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTG
CTGAGAAAGTTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCGAGGCCTCGGGCAC
TGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATG
GCAGAGGAGGCGGGGGAGGAGAACTTCTTCATCTTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACC
AGAGAGGGTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAG
CAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGAC
CGGTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGA
ACCCAAGAGAGTGGACACGGATGGTGATCAGGAACATAGCCACCTCTGGCAAGTTTTCCAGTGACCGCAC
CATTGCCCAGTATGCCCGGGAGATCTGGGGTGTTGAACCTTCTCGCCAGCGCCTGCCAGCCCCAGATGAG
AAGATCTGA

Translation (842 aa):
MSRPLSDQDKRKQISVRGLAGVENVSELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIR
TQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRL
AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRVEHT
SQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVL
YPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGSRDPVRTNFDAFPDKVAIQLNDTHPSLAIPEL
MRILVDLERLDWDKAWDVTVKTCAYTNHTVLPEALERWPVHLMETLLPRHLQIIYEINQRFLNRVAAAFP
GDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPR
RWLVLCNPGLAEVIAERIGEDYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFSAYLEREYKVHINP
NSLFDVQVKRIHEYKRQLLNCLHIITLYNRIKREPNRFMVPRTIMIGGKAAPGYHMAKMIIKLITAIGDV
VNHDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEM
AEEAGEENFFIFGMRVEDVERLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHD
RFKVFADYEEYIKCQDKVSELYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE
KI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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