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Report for CCDS29695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29695.1 Public Mus musculus 19 Aldh1a1 23 108 98 CCDS HistoryNCBI Gene:11668Re-query CCDS DB by CCDS ID:29695.1Re-query CCDS DB by GeneID:11668See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29695.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087638.3 ENSMUSP00000084918.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087638.3Link to Ensembl Protein Viewer:ENSMUSP00000084918.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087638Re-query CCDS DB by Protein ID:ENSMUSP00000084918
Original member Current member EBI ENSMUST00000225337.2 ENSMUSP00000153410.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225337.2Link to Ensembl Protein Viewer:ENSMUSP00000153410.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000225337Re-query CCDS DB by Protein ID:ENSMUSP00000153410
Original member Current member NCBI NM_001361503.1 NP_001348432.1 Accepted alive Link to Nucleotide Sequence:NM_001361503.1Link to Protein Sequence:NP_001348432.1Re-query CCDS DB by Nucleotide ID:NM_001361503Re-query CCDS DB by Protein ID:NP_001348432Link to BLAST:NP_001348432.1
Original member Current member NCBI NM_001361504.1 NP_001348433.1 Accepted alive Link to Nucleotide Sequence:NM_001361504.1Link to Protein Sequence:NP_001348433.1Re-query CCDS DB by Nucleotide ID:NM_001361504Re-query CCDS DB by Protein ID:NP_001348433Link to BLAST:NP_001348433.1
Original member Current member NCBI NM_001361505.1 NP_001348434.1 Accepted alive Link to Nucleotide Sequence:NM_001361505.1Link to Protein Sequence:NP_001348434.1Re-query CCDS DB by Nucleotide ID:NM_001361505Re-query CCDS DB by Protein ID:NP_001348434Link to BLAST:NP_001348434.1
Original member Current member NCBI NM_001361506.1 NP_001348435.1 Accepted alive Link to Nucleotide Sequence:NM_001361506.1Link to Protein Sequence:NP_001348435.1Re-query CCDS DB by Nucleotide ID:NM_001361506Re-query CCDS DB by Protein ID:NP_001348435Link to BLAST:NP_001348435.1
Original member Current member NCBI NM_013467.4 NP_038495.2 Accepted alive Link to Nucleotide Sequence:NM_013467.4Link to Protein Sequence:NP_038495.2Re-query CCDS DB by Nucleotide ID:NM_013467Re-query CCDS DB by Protein ID:NP_038495Link to BLAST:NP_038495.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348432.1 501 P24549 501 100% 0 0
NP_001348433.1 501 P24549 501 100% 0 0
NP_001348434.1 501 P24549 501 100% 0 0
NP_001348435.1 501 P24549 501 100% 0 0
NP_038495.2 501 P24549 501 100% 0 0

Chromosomal Locations for CCDS 29695.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 20602012 20602077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20610913 20611017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20617880 20618020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20619969 20620098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20621669 20621730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20623325 20623453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20624712 20624825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20629054 20629156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20630666 20630850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20634349 20634513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20636668 20636825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20640064 20640138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20642894 20642966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGTCTTCGCCTGCACAACCTGCAGTCCCTGCCCCACTGGCCGACTTGAAGATTCAACATACCAAGATCT
TCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGA
GGTCATCTGCCACGTGGAAGAAGGGGACAAGGCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCT
TTCCAGATTGGCTCTCCATGGCGCACCATGGATGCTTCAGAGAGGGGCCGCCTGCTGAACAAGCTGGCTG
ACTTAATGGAGAGAGATCGTCTGCTGCTGGCTACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAA
TGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATT
CATGGTCAAACAATACCAAGTGATGGAGACATTTTCACTTATACAAGACGTGAACCTATTGGAGTGTGTG
GCCAAATCATCCCCTGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGG
GAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAA
GAGGCAGGGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCT
CCTCTCACATGGATGTCGACAAGGTGGCCTTCACTGGATCAACACAGGTTGGCAAGTTAATCAAGGAAGC
TGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCA
GATGCCGACTTGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTG
TCGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGGAGTGTTGAGCGAGC
TAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAGATTGACAAGGAACAA
CATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGAC
GCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGC
CAAAGAGGAGATATTTGGACCAGTGCAACAAATCATGAAGTTTAAGTCTGTAGATGATGTGATCAAGAGA
GCAAACAATACTACCTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGT
CATCTGCTCTGCAGGCTGGGGTGGTGTGGGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGG
TGGATTCAAGATGTCTGGAAATGGAAGAGAACTGGGTGAACATGGTCTTTATGAATACACTGAGCTCAAG
ACAGTCGCAATGAAGATATCTCAGAAGAACTCCTAA

Translation (501 aa):
MSSPAQPAVPAPLADLKIQHTKIFINNEWHNSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQA
FQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYLSDLGGCIKALKYCAGWADKI
HGQTIPSDGDIFTYTRREPIGVCGQIIPWNFPMLMFIWKIGPALSCGNTVVVKPAEQTPLTALHLASLIK
EAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFA
DADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEFVKRSVERAKKYVLGNPLTPGINQGPQIDKEQ
HDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIKR
ANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGLYEYTELK
TVAMKISQKNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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