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Report for CCDS29730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29730.1 Public Mus musculus 19 Ak3 23 108 98 CCDS HistoryNCBI Gene:56248Re-query CCDS DB by CCDS ID:29730.1Re-query CCDS DB by GeneID:56248See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29730.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025696.4 ENSMUSP00000025696.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025696.4Link to Ensembl Protein Viewer:ENSMUSP00000025696.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025696Re-query CCDS DB by Protein ID:ENSMUSP00000025696
Original member Current member NCBI NM_021299.2 NP_067274.1 Accepted alive Link to Nucleotide Sequence:NM_021299.2Link to Protein Sequence:NP_067274.1Re-query CCDS DB by Nucleotide ID:NM_021299Re-query CCDS DB by Protein ID:NP_067274Link to BLAST:NP_067274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067274.1 227 Q9WTP7 227 100% 0 0

Chromosomal Locations for CCDS 29730.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29022826 29022946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29026212 29026330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29027171 29027343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29037872 29037991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29047679 29047829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGGGGCGTCGGGGCGGCTGCTGCGCGCCGTGATCATGGGGGCCCCGGGCTCCGGCAAGGGCACCGTGT
CGTCACGCATCACCAAACACTTCGAGCTGAAGCACCTCTCCAGCGGGGACCTGCTCCGCCAGAACATGCT
GCAGGGCACAGAAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTC
ATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATGGATTTCCAA
GGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCC
CTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATT
GAATTCAACCCTCCCAAGACTGTGGGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATG
ACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTA
CCAGAAAAAAGGGGTGTTGGAAACATTCTCTGGAACAGAAACCAACAAGATCTGGCCCCACGTATACTCC
TTCCTACAGACGAAAGTTCCAGAAACTACCCAAAAGGCCTCTGTTACTCCCTGA

Translation (227 aa):
MGASGRLLRAVIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRQNMLQGTEIGVLAKTFIDQGKLIPDDV
MTRLALHELKTLTQCSWLLDGFPRTLPQAEALDKVYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNI
EFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEAQTEPVLQYYQKKGVLETFSGTETNKIWPHVYS
FLQTKVPETTQKASVTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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