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Report for CCDS29790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29790.1 Public Mus musculus 19 Cyp2c55 23 108 98 CCDS HistoryNCBI Gene:72082Re-query CCDS DB by CCDS ID:29790.1Re-query CCDS DB by GeneID:72082See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025966.4 ENSMUSP00000025966.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025966.4Link to Ensembl Protein Viewer:ENSMUSP00000025966.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025966Re-query CCDS DB by Protein ID:ENSMUSP00000025966
Original member Current member NCBI NM_028089.3 NP_082365.1 Accepted alive Link to Nucleotide Sequence:NM_028089.3Link to Protein Sequence:NP_082365.1Re-query CCDS DB by Nucleotide ID:NM_028089Re-query CCDS DB by Protein ID:NP_082365Link to BLAST:NP_082365.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082365.1 490 Q9D816 490 100% 0 0

Chromosomal Locations for CCDS 29790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39007046 39007213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39011020 39011182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39011690 39011839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39018643 39018803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39031262 39031438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39034239 39034380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39035445 39035632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39038100 39038241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39042017 39042198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGATCCAGTCCTGGTCCTGGTGCTCACTCTCTCCTGTCTGCTTCTCCTCTCCCTCTGGAGACAAAACT
CTGGGAGAGGGAAGCTCCCTCCTGGCCCCACCCCTTTCCCAATTATTGGAAACATCCTTCAGATAGATAT
AAAGAACATCAGCAAATCCTTCAACTATTTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGT
TCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGT
TTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGGGGGTGATTTTCAGCAATGG
AACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGC
ATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATGGTTCACTCT
GTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTT
TGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCC
CCATGGATGCAGGTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAA
TTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACAT
GGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAGGAAAAACACAATCCCCATTCG
GAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACA
TTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAGCTAAAGTCCAGGCAGAGAT
CGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCC
ATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATG
TTAGATTCAGAAGTTACTTCATCCCCAAGGGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGA
TGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAG
AAGAGTGACTACTTTATGCCTTTCTCAATAGGAAAGCGAATGTGCGTGGGAGAGGCCCTGGCTCGCACGG
AGCTGTTTTTGATTCTGACCACCATTTTACAGAATTTTAACCTGAAATCTTTGGTTGATACAAAGGACAT
TGACACTACTCCAGTGGCCAATACTTTTGGCCGTGTACCACCTTCATACCAGCTGTACTTCATTCCTCGT
TAA

Translation (490 aa):
MDPVLVLVLTLSCLLLLSLWRQNSGRGKLPPGPTPFPIIGNILQIDIKNISKSFNYFSKVYGPVFTLYFG
SKPTVVVHGYEAVKEALDDLGEEFSGRGSFQIFERINNDLGVIFSNGTKWKELRRFSIMTLRSFGMGKRS
IEDRIQEEASCLVEELRKANGSLCDPTFILSCAPSNVICSVIFHNRFDYKDEKFLNLMERLNENFKILNS
PWMQVYNALPTLINYLPGSHNKVIKNFTEIKSYILGRVKEHQETLDMDNPRDFIDCFLIKMEQEKHNPHS
EFTIESLMATVTDIFVAGTETTNITLRYGLLLLLKHTEVTAKVQAEIDHVIGRHRSPCMQDRTRMPYTDA
MVHEIQRYIDLIPNNVPHAATCNVRFRSYFIPKGTELVTSLTSVLHDDKEFPNPEVFDPGHFLDENGNFK
KSDYFMPFSIGKRMCVGEALARTELFLILTTILQNFNLKSLVDTKDIDTTPVANTFGRVPPSYQLYFIPR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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