NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29800.1 Public Mus musculus 19 Cyp2c54 23 108 98 CCDS HistoryNCBI Gene:404195Re-query CCDS DB by CCDS ID:29800.1Re-query CCDS DB by GeneID:404195See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29800.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048959.4 ENSMUSP00000048284.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048959.4Link to Ensembl Protein Viewer:ENSMUSP00000048284.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000048959Re-query CCDS DB by Protein ID:ENSMUSP00000048284
Original member Current member NCBI NM_206537.2 NP_996260.1 Accepted alive Link to Nucleotide Sequence:NM_206537.2Link to Protein Sequence:NP_996260.1Re-query CCDS DB by Nucleotide ID:NM_206537Re-query CCDS DB by Protein ID:NP_996260Link to BLAST:NP_996260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996260.1 490 Q6XVG2 490 100% 0 0

Chromosomal Locations for CCDS 29800.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40038237 40038418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40040192 40040333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40046076 40046263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40047504 40047645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40070168 40070344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40071446 40071606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40072055 40072204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40072367 40072529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40073644 40073811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGATCCAATCCTGGTCCTGGTGCTCACTCTCTCCTGTCTGTTTCTCCTCTCACTCTGGAGACAGAGCT
ATGAAAGAGGGAAGCTTCCCCCTGGCCCCACTCCTCTTCCAATTATTGGAAACATCCTTCAGATAGATGT
GAAGGACATCTGCCAATCCTTCACCAATTTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGC
AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCT
TTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGGCATTGGATTTAGTAATGG
AAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGC
ATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGGCTCACCCT
GTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTT
TGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACC
CCCTGGTTGCAGGTTTGCAATACATTTCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAACCAATTTT
TTAAAAATTATGCTTATATTAAAAATTTCCTTTTGGAGAAAATAAGGGAACATAAAGAATCATTGGATGT
TACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAAAGGAGCCCAGGAAGATGACAATCATCCTTTG
AAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCA
CAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAGCTAAAGTCCAGGAAGAAAT
TGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCC
ATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACA
TTAAATTCAGGAACTACTTCATTCCCAAGGGAACAACTGTAATAACATCACTGTCATCAGTGCTGCGTGA
TAGCAAGGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAATGGAAAGTTTAAA
AAAAGTGACTACTTCATGCCATTCTCAACAGGGAAACGGATATGTGCAGGAGAGGGCCTGGCACGCATGG
AGCTGTTCCTGTTCCTAACCAGCATTTTACAGAACTTCAACCTGAAACCTCTGGTTCACCCAAAGGACAT
AGATATAACCCCAATGCTCATTGGATTGGGCTCAGTGCCTCCTGCTTTCCAGCTCTGCTTCATTCCTTCC
TGA

Translation (490 aa):
MDPILVLVLTLSCLFLLSLWRQSYERGKLPPGPTPLPIIGNILQIDVKDICQSFTNLSRVYGPVYTLYLG
RKPTVVLHGYEAVKEALVDHGDVFAGRGRLPVFDKATNGMGIGFSNGSVWKNTRHFSLMTLRNLGMGKRS
IEDRVQEEARCLVEELRKTNGSPCDPTFILGCAPCNVICSIIFQDRFDYKDRDFLNLLEKLDEISKILST
PWLQVCNTFPALLDYCPGSHNQFFKNYAYIKNFLLEKIREHKESLDVTIPRDFIDYFLIKGAQEDDNHPL
KNNFEHLAITVTDLFIGGTESMSTTLRYALLLLLKYPHVTAKVQEEIEHVIGKHRRPCMQDRSHMPYTNA
MIHEVQRFIDLVPNNLPHEVTCDIKFRNYFIPKGTTVITSLSSVLRDSKEFPNPEKFDPGHFLDENGKFK
KSDYFMPFSTGKRICAGEGLARMELFLFLTSILQNFNLKPLVHPKDIDITPMLIGLGSVPPAFQLCFIPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH