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Report for CCDS30208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30208.1 Public Mus musculus X Slc6a8 23 108 98 CCDS HistoryNCBI Gene:102857Re-query CCDS DB by CCDS ID:30208.1Re-query CCDS DB by GeneID:102857See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 30208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033752.13 ENSMUSP00000033752.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033752.13Link to Ensembl Protein Viewer:ENSMUSP00000033752.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033752Re-query CCDS DB by Protein ID:ENSMUSP00000033752
Original member Current member NCBI NM_133987.2 NP_598748.1 Accepted alive Link to Nucleotide Sequence:NM_133987.2Link to Protein Sequence:NP_598748.1Re-query CCDS DB by Nucleotide ID:NM_133987Re-query CCDS DB by Protein ID:NP_598748Link to BLAST:NP_598748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598748.1 640 Q8VBW1-1 640 100% 0 0

Chromosomal Locations for CCDS 30208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73673789 73674050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73675638 73675769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73676650 73676899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73677321 73677453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73678636 73678770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73678866 73678969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73679064 73679188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73679685 73679797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73679919 73680071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73680132 73680234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73680332 73680432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73680505 73680675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73680960 73681100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGCGAAAAAGAGCGCTGAAAACGGTATCTATAGCGTGTCTGGTGACGAGAAGAAGGGTCCTCTCATCG
TGTCCGGGCCCGACGGTGCCCCAGCCAAGGGCGATGGCCCTGCGGGCCTGGGGGCGCCTGGCGGCCGCCT
TGCAGTGCCACCGCGAGAGACTTGGACACGCCAGATGGACTTCATCATGTCGTGCGTGGGCTTCGCCGTG
GGCCTCGGTAACGTGTGGCGCTTCCCCTACCTGTGCTACAAGAACGGCGGAGGTGTGTTCCTTATTCCCT
ATGTCCTGATTGCCCTGGTTGGAGGAATCCCCATTTTCTTCCTGGAAATCTCATTGGGCCAGTTCATGAA
GGCCGGCAGCATCAATGTCTGGAACATCTGTCCCCTATTCAAAGGTCTGGGCTATGCCTCCATGGTGATT
GTCTTCTACTGCAACACTTACTACATCATGGTGCTGGCCTGGGGCTTCTATTACCTGGTCAAGTCCTTTA
CTACCACTTTGCCATGGGCTACATGTGGCCACACCTGGAACACTCCTGACTGTGTGGAGATCTTCCGCCA
TGAAGACTGTGCCAATGCCAGCCTGGCCAACCTCACATGTGACCAGCTTGCTGACCGCCGGTCCCCTGTC
ATCGAGTTCTGGGAGAACAAAGTATTGAGGCTCTCCACGGGGCTGGAGGTTCCAGGAGCCCTCAACTGGG
AGGTGACCTTGTGCCTGCTGGCCTGCTGGGTGCTGGTCTACTTCTGTGTGTGGAAGGGGGTCAAGTCAAC
AGGAAAGATCGTGTACTTCACTGCTACATTCCCCTACGTGGTCCTCGTTGTGCTGCTGGTGCGAGGGGTG
CTGCTGCCTGGAGCCCTGGATGGTATCATCTACTATCTCAAGCCTGACTGGTCAAAGCTAGGGTCCCCTC
AGGTATGGATAGATGCTGGGACCCAGATTTTCTTCTCTTATGCCATAGGCCTGGGGGCCCTCACAGCCCT
AGGCAGCTACAATCGCTTCAACAACAACTGCTACAAGGATGCCATCATCCTGGCACTCATCAACAGCGGG
ACCAGCTTCTTTGCTGGCTTTGTGGTCTTCTCCATCCTGGGCTTCATGGCCACAGAGCAGGGTGTGCATA
TCTCCAAGGTGGCAGAATCAGGGCCTGGTCTAGCCTTCATTGCCTACCCACGGGCTGTCACACTGATGCC
TGTGGCCCCACTCTGGGCTGCCTTGTTCTTCTTCATGCTGCTGCTGCTCGGTCTGGACAGCCAGTTTGTA
GGTGTGGAGGGCTTCATTACCGGGCTCCTGGATCTCCTCCCGGCCTCCTACTACTTCCGTTTCCAAAGGG
AGATCTCCGTTGCTCTCTGCTGCGCCCTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAGTGG
GGGTAAGGGTGGAATGTACGTCTTCCAGCTATTTGACTACTACTCAGCTAGTGGCACTACCCTGCTTTGG
CAAGCCTTTTGGGAGTGTGTAGTTGTGGCTTGGGTTTATGGAGCTGACCGCTTCATGGATGACATTGCCT
GTATGATTGGGTACCGACCTTGCCCCTGGATGAAATGGTGCTGGTCCTTCTTCACCCCATTGGTCTGCAT
GGGCATCTTCATCTTCAACATTGTGTACTACGAGCCACTGGTCTACAACAACACCTACGTGTACCCATGG
TGGGGTGAAGCTATGGGCTGGGCCTTTGCACTCTCTTCTATGCTATGTGTACCCCTCCACCTCCTGGGCT
GTCTCCTCAGGGCAAAAGGAACCATGGCAGAGCGATGGCAGCACCTGACCCAGCCTATCTGGGGCCTCCA
TCACTTGGAATACAGAGCTCAGGATGCAGATGTCAGGGGCCTGACCACCCTGACTCCCGTGTCCGAGAGC
AGCAAGGTCGTCGTGGTGGAGAGTGTCATGTAA

Translation (640 aa):
MAKKSAENGIYSVSGDEKKGPLIVSGPDGAPAKGDGPAGLGAPGGRLAVPPRETWTRQMDFIMSCVGFAV
GLGNVWRFPYLCYKNGGGVFLIPYVLIALVGGIPIFFLEISLGQFMKAGSINVWNICPLFKGLGYASMVI
VFYCNTYYIMVLAWGFYYLVKSFTTTLPWATCGHTWNTPDCVEIFRHEDCANASLANLTCDQLADRRSPV
IEFWENKVLRLSTGLEVPGALNWEVTLCLLACWVLVYFCVWKGVKSTGKIVYFTATFPYVVLVVLLVRGV
LLPGALDGIIYYLKPDWSKLGSPQVWIDAGTQIFFSYAIGLGALTALGSYNRFNNNCYKDAIILALINSG
TSFFAGFVVFSILGFMATEQGVHISKVAESGPGLAFIAYPRAVTLMPVAPLWAALFFFMLLLLGLDSQFV
GVEGFITGLLDLLPASYYFRFQREISVALCCALCFVIDLSMVTDVSGGKGGMYVFQLFDYYSASGTTLLW
QAFWECVVVAWVYGADRFMDDIACMIGYRPCPWMKWCWSFFTPLVCMGIFIFNIVYYEPLVYNNTYVYPW
WGEAMGWAFALSSMLCVPLHLLGCLLRAKGTMAERWQHLTQPIWGLHHLEYRAQDADVRGLTTLTPVSES
SKVVVVESVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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