NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30309.1 Public Mus musculus X Slc7a3 23 108 98 CCDS HistoryNCBI Gene:11989Re-query CCDS DB by CCDS ID:30309.1Re-query CCDS DB by GeneID:11989See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073927.4 ENSMUSP00000073582.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073927.4Link to Ensembl Protein Viewer:ENSMUSP00000073582.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000073927Re-query CCDS DB by Protein ID:ENSMUSP00000073582
Original member Current member EBI ENSMUST00000101362.7 ENSMUSP00000098914.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101362.7Link to Ensembl Protein Viewer:ENSMUSP00000098914.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101362Re-query CCDS DB by Protein ID:ENSMUSP00000098914
Original member Current member EBI ENSMUST00000113710.7 ENSMUSP00000109339.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113710.7Link to Ensembl Protein Viewer:ENSMUSP00000109339.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113710Re-query CCDS DB by Protein ID:ENSMUSP00000109339
Original member Current member NCBI NM_001301840.1 NP_001288769.1 Accepted alive Link to Nucleotide Sequence:NM_001301840.1Link to Protein Sequence:NP_001288769.1Re-query CCDS DB by Nucleotide ID:NM_001301840Re-query CCDS DB by Protein ID:NP_001288769Link to BLAST:NP_001288769.1
Original member Current member NCBI NM_007515.3 NP_031541.1 Accepted alive Link to Nucleotide Sequence:NM_007515.3Link to Protein Sequence:NP_031541.1Re-query CCDS DB by Nucleotide ID:NM_007515Re-query CCDS DB by Protein ID:NP_031541Link to BLAST:NP_031541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288769.1 618 P70423 618 100% 0 0
NP_031541.1 618 P70423 618 100% 0 0

Chromosomal Locations for CCDS 30309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101079462 101079592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101079700 101079808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101080101 101080267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101080708 101080871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101081696 101081798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101081893 101082032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101082191 101082413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101082534 101082646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101082791 101082968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101083148 101083306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101083871 101084240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGCTGTGGCAGGCACTTCGAAGATTTGGTCAAAAGCTGGTGCGGAGACGTGTGTTGGAGCTGGGTATGG
GTGAGACCCGCCTTGCCAGATGCCTGAGCACCCTCGACTTAGTGGCTCTGGGTGTGGGCAGCACATTAGG
TGCAGGTGTGTATGTCCTGGCTGGAGAGGTGGCCAAAGATAAAGCAGGACCATCCATTGTGATCTGCTTT
TTGGTGGCTGCTCTGTCCTCTGTGTTGGCTGGACTGTGTTATGCTGAATTTGGTGCCCGGGTCCCCGGCT
CTGGTTCTGCATATCTCTACAGTTATGTCACCGTAGGTGAACTCTGGGCCTTCACCACCGGCTGGAATCT
CATTCTCTCCTACGTCATTGGTACAGCCAGTGTGGCCCGGGCTTGGAGCTCTGCTTTTGACAACCTGATT
GGAAACCACATCTCTCGGACTCTGAAGGGGACCATCTTGCTGAAGATGCCTCATGTTCTTGCAGAATATC
CAGATTTCTTTGCCTTGGCCCTTGTGTTGCTGCTCACTGGATTGCTGGTTTTAGGGGCAAGTAAATCAGC
CCTGGTTACCAAAGTGTTCACAGGGATGAACCTTTTGGTTCTCAGCTTTGTCATCATCTCTGGCTTCATT
AAGGGAGAACTGAGAAACTGGAAGCTCACGAAAGAGGACTATTGCTTGACCATGAGTGAATCCAACGGCA
CTTGTAGCTTGGACTCTATGGGCTCTGGAGGTTTCATGCCTTTTGGCTTGGAAGGGATTCTCCGTGGCGC
TGCTACCTGTTTCTATGCCTTCGTTGGTTTTGACTGTATTGCAACCACCGGAGAAGAGGCTCAGAATCCC
CAGCGCTCCATCCCCATGGGTATTGTGATCTCGATGTTCATCTGCTTTTTGGCTTACTTTGGTGTGTCTT
CAGCACTTACCCTCATGATGCCTTACTACAAGCTTCATCCTGAGAGCCCTCTGCCTGAAGCATTTTCCTA
TGTTGGCTGGGAGCCTGCCCGCTACTTGGTGGCTATTGGCTCCCTCTGTGCACTTTCTACTAGCCTTTTG
GGCTCTATGTTTCCTATGCCTCGGGTGATGTATTCAATGGCAGAAGATGGCCTCCTGTTCCGTGTCCTTG
CTAAGGTTCACAGTGTCACACATATACCCATTGTGGCCACCTTGGTATCTGGTGTTATTGCAGCATTCAT
GGCATTCCTCTTTGAACTCACTGACCTCGTGGACCTCATGTCAATCGGGACTCTGCTTGCTCACTCCCTG
GTGTCCATTTGTGTTCTCATCCTCAGATATCAGCCTGATCAGGAAATGAAGAGTGTTGAAGAGGAAATGG
AATTGCAAGAGGAGACACTTGAAGCAGAGAAGCTGACTGTCCAGGCTCTATTTTGTCCTGTCAACTCCAT
CCCCACACTCCTTTCTGGCCGAGTTGTCTATGTTTGCTCCTCACTGCTTGCCGTACTACTAACTGTTCTT
TGCCTGGTGCTGACCTGGTGGACAACTCCACTTCGTTCTGGAGACCCAGTGTGGGTCACAGTGGTTGTGC
TGATCCTGGGGCTCATTCTTGCAATTTCTGGGGTCATCTGGAGACAGCCACAGAACCGCACTCCCCTTCA
CTTTAAGGTGCCTGCTGTTCCTCTACTCCCACTGGTGAGCATCTTTGTGAATGTTTACCTGATGATGCAA
ATGACAGCTGGCACTTGGGCCCGATTTGGGATCTGGATGCTGATTGGATTTGCTATCTACTTTGGCTATG
GGATCCAACACAGTATGAAAGAAGTTAAGAATCATCAAACTCTACCCAAAACAAGGGCCCAAACTATAGA
CCTTGATCTCACAACTTCCTGTGTTCACAGCATTTGA

Translation (618 aa):
MLWQALRRFGQKLVRRRVLELGMGETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICF
LVAALSSVLAGLCYAEFGARVPGSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLI
GNHISRTLKGTILLKMPHVLAEYPDFFALALVLLLTGLLVLGASKSALVTKVFTGMNLLVLSFVIISGFI
KGELRNWKLTKEDYCLTMSESNGTCSLDSMGSGGFMPFGLEGILRGAATCFYAFVGFDCIATTGEEAQNP
QRSIPMGIVISMFICFLAYFGVSSALTLMMPYYKLHPESPLPEAFSYVGWEPARYLVAIGSLCALSTSLL
GSMFPMPRVMYSMAEDGLLFRVLAKVHSVTHIPIVATLVSGVIAAFMAFLFELTDLVDLMSIGTLLAHSL
VSICVLILRYQPDQEMKSVEEEMELQEETLEAEKLTVQALFCPVNSIPTLLSGRVVYVCSSLLAVLLTVL
CLVLTWWTTPLRSGDPVWVTVVVLILGLILAISGVIWRQPQNRTPLHFKVPAVPLLPLVSIFVNVYLMMQ
MTAGTWARFGIWMLIGFAIYFGYGIQHSMKEVKNHQTLPKTRAQTIDLDLTTSCVHSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH