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Report for CCDS30446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30446.1 Public Mus musculus X Gucy2f 23 108 98 CCDS HistoryNCBI Gene:245650Re-query CCDS DB by CCDS ID:30446.1Re-query CCDS DB by GeneID:245650See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042530.3 ENSMUSP00000044521.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042530.3Link to Ensembl Protein Viewer:ENSMUSP00000044521.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042530Re-query CCDS DB by Protein ID:ENSMUSP00000044521
Original member Current member NCBI NM_001007576.2 NP_001007577.1 Accepted alive Link to Nucleotide Sequence:NM_001007576.2Link to Protein Sequence:NP_001007577.1Re-query CCDS DB by Nucleotide ID:NM_001007576Re-query CCDS DB by Protein ID:NP_001007577Link to BLAST:NP_001007577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007577.1 1108 Q5SDA5 1108 100% 0 0

Chromosomal Locations for CCDS 30446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 142088855 142088942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142089040 142089128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142094185 142094279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142097295 142097393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142100368 142100542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142104295 142104487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142105245 142105408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142107922 142108070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142110966 142111115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142116238 142116394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142118467 142118643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142128960 142129049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142142355 142142486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142156388 142156484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142160164 142160248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142161577 142161931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142179980 142180281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142189121 142189850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3327 nt):
ATGTTCCTCGGACCCTGGCCTTTTTCTCGCCTTCTGTCCTGGTTTGCCATTTCCAGCAGACTGTCAGGAC
AGCATGGCCTCCCTTCCTCCAAGTTCCTGAGATGTTTGTGCCTCTTGGCCCTTTTGCCTCTCCTTCGGTG
GGGGCAAGCACTCCCCTACAAGATCGGGGTCATAGGTCCCTGGACATGTGATCCGTTCTTTTCCAAGGCC
CTGCCTGAGGTTGCTGCTGCTTTAGCAATTGAGCGAATCAGCCGGGACAAGACATTTGACAGGAGTTACT
CCTTCGAATACGTGATTCTTAACGAAGACTGTCAGACTTCAAAGGCCCTCGCCAGTTTCATTTCCCACCA
GCAGATGGCCTCAGGATTTGTTGGGCCTGCCAACCCTGGCTTCTGCGAGGCAGCCTCACTCCTGGGAACC
AGCTGGGACAAAGGGATTTTCTCTTGGGCTTGTGTGAATCATGAATTAGATAACAAACATAGCTTCCCAA
CCTTCTCTCGGACACTCCCTTCTCCGATACGGGTGCTTGTAACCGTCATGAAGTATTTCCAGTGGGCACA
TGCTGGGGTCATTTCCTCAGATGAAGACATTTGGATGCATACAGCCAATCGAGTCTCAAGTGCTCTTCGG
AGCCAGGGCCTACCTGTAGGGGTCGTCCTGACCTCGGGACGAGACAGCCAGAGCATTCAGAAAGCTCTCC
AGCAGATTCGCCAGGCAGACAGAATTCGCATAATCATAATGTGTATGCATTCAGCCTTGATTGGGGGAGA
GACACAAACACACTTCTTGGAATTGGCTCATGATCTGAAAATGACAGATGGGACTTACGTCTTTGTCCCC
TATGATGTACTGCTCTACAGTTTACCTTATAAGCACAGCCCCTACCAGGTCCTGAGGAACAATCCAAAGC
TCCGGGAAGCCTATGATGCTGTGTTGACTATTACAGTGGAGTCCCATGAAAAGACCTTCTACGAAGCCTA
TGCAGAAGCAGCAGCCCGCGGAGAAATTCCTGAGAAGCCTGACTCAAACCAAGTTTCACCGTTGTTTGGA
ACCATCTACAATTCAATTTATTTTATCGCACAAGCCATGAATAATGCTATGAAAAAAAATGGACGGGCTA
GTGCTGCCAGCCTGGTTCAGCATTCCAGAAACATGCAGTTCTATGGATTCAACCAGTTGATAAAGACAGA
CTCAAATGGAAATGGGATTTCTGAATATGTAATCCTGGACACCAATGGGAAAGAATGGGAACTTCGTGGC
ACCTACACTGTGGACATGGAAACTGAACTGCTAAGGTTCAGAGGGACCCCAATTCATTTCCCTGGCGGCA
GACCTACTAGTGCAGATGCAAAATGCTGGTTTGCAGAAAGGAAGATCTGCCAAGGAGGTATTGACCCTGC
CTTGGCCATGATGGTCTGCTTTGCTTTACTTATAGCCTTGCTGTCTATCAATGGATTTGCTTACTTTATA
AGGCGACGTATAAATAAAATCCAGTTGATTAAAGGACCCAACAGAATCCTACTGACTTTGGAAGATGTGA
CATTTATTAATCCCCACTTTGGCAGTAAGAGAGGAAGCCGTGCCAGTGTAAGCTTCCAGATCATCTCAGA
AGTTCAAAGTGGGAGGTCCCCAAGGCTGTCCTTTTCTTCAGGTAGTCTAACTCCAGCTACATATGAGAAC
TCCAACATAGCAATCTATGAGGGTGACTGGGTATGGCTGAAAAAGTTCCCTCCTGGAGATTTTGGAGACA
TTAAGTCTATCAAATCGAGTGCAAGTGATGTGTTTGAAATGATGAAGGACCTGCGGCATGAAAATGTCAA
CCCTCTATTGGGTTTCTTCTATGATTCGGGGATGTTTGCCATCGTGTCAGAATTTTGTTCTCGAAGGAGC
CTAGAAGACATACTTACAAATGATGATGTGAAACTTGATTGGATGTTCAAATCATCACTACTGCTTGACC
TCATCAAGGGGATGAAATACTTACACCACAGAGAATTTATTCACGGGAGGCTAAAGTCTCGGAACTGTGT
GGTAGATGGGCGTTTTGTCCTAAAAGTGACAGATTATGGCTTTAATGACATTTTAGAAATGCTGAGACTC
TCTGAAGAGGAACCTTCTGAAGAAGAGCTGCTGTGGACGGCCCCTGAACTGTTAAGAGCCCCTGGGGGCA
TCAGGTTAGGTTCATTTGCAGGAGACGTCTATAGCTTTGCCATCATCATGCAAGAAGTGATGGTTCGGGG
TGCTCCTTTCTGCATGATGGATCTGCCTGCCAAAGAAATCATAGACAGACTTAAAATGCCTCCCCCTGTG
TACAGACCCGTGGTTTCTCCTGAGTATGCCCCTGCAGAATGTCTCCAGCTGATGAAGCAGTGCTGGGCTG
AGGCGTCAGAACAGCGACCAACTTTTGATGAAATATTTAACCAGTTTAAAACTTTCAACAAAGGGAAAAA
GACTAATATTATTGATTCTATGCTTCGGATGTTGGAGCAGTATTCTAGCAACTTGGAAGATTTGATCCGG
GAACGGACTGAAGAATTGGAAATTGAAAAACAGAAAACGGAAAAGCTTCTAACACAGATGCTACCACTAT
CAGTTGCTGAATCCCTCAAGAAGGGCTGTACAGTTGAACCTGAGGGATTTGACTTGGTCACCTTGTACTT
CAGTGACATTGTGGGCTTCACCACCATCTCAGCCATGAGTGAGCCCATTGAAGTTGTGGACCTTCTGAAT
GACCTGTACACACTCTTTGATGCCATCATTGGCAGTCATGATGTCTATAAAGTAGAGACCATTGGAGATG
CCTACATGGTGGCCTCAGGCCTTCCCAAGAGGAATGGCAGTAGGCATGCAGCTGAGATTGCAAACATGTC
CCTGGATATCCTGAGTTCTGTGGGTACCTTTAAGATGCGACACATGCCAGAGGTGCCAGTCCGAATTCGA
ATAGGCCTGCACTCGGGGCCTGTTGTTGCTGGAGTGGTGGGCCTCACCATGCCCAGATATTGCTTGTTTG
GGGACACTGTGAACACAGCTTCTCGAATGGAATCAACAGGGCTACCATACCGAATTCATGTCAGTCTCAG
CACAGTAACAATTCTTCAAACTCTGAGTGAAGGCTATGAAGTAGAGCTTCGTGGAAGAACAGAGCTCAAG
GGCAAAGGCACAGAGGAGACCTTTTGGCTTGTTGGAAAAAAGGGTTTCACCAAACCTCTTCCTGTACCCC
CACCAGTGGGCAAAGATGGGCAAGTGGGCCATGGCTTGCAACCAGCAGAGATTGCAGCATTCCAAAGGAG
AAAAGCAGAGAGGCAGTTGGTGCGAAACAAGCCATAA

Translation (1108 aa):
MFLGPWPFSRLLSWFAISSRLSGQHGLPSSKFLRCLCLLALLPLLRWGQALPYKIGVIGPWTCDPFFSKA
LPEVAAALAIERISRDKTFDRSYSFEYVILNEDCQTSKALASFISHQQMASGFVGPANPGFCEAASLLGT
SWDKGIFSWACVNHELDNKHSFPTFSRTLPSPIRVLVTVMKYFQWAHAGVISSDEDIWMHTANRVSSALR
SQGLPVGVVLTSGRDSQSIQKALQQIRQADRIRIIIMCMHSALIGGETQTHFLELAHDLKMTDGTYVFVP
YDVLLYSLPYKHSPYQVLRNNPKLREAYDAVLTITVESHEKTFYEAYAEAAARGEIPEKPDSNQVSPLFG
TIYNSIYFIAQAMNNAMKKNGRASAASLVQHSRNMQFYGFNQLIKTDSNGNGISEYVILDTNGKEWELRG
TYTVDMETELLRFRGTPIHFPGGRPTSADAKCWFAERKICQGGIDPALAMMVCFALLIALLSINGFAYFI
RRRINKIQLIKGPNRILLTLEDVTFINPHFGSKRGSRASVSFQIISEVQSGRSPRLSFSSGSLTPATYEN
SNIAIYEGDWVWLKKFPPGDFGDIKSIKSSASDVFEMMKDLRHENVNPLLGFFYDSGMFAIVSEFCSRRS
LEDILTNDDVKLDWMFKSSLLLDLIKGMKYLHHREFIHGRLKSRNCVVDGRFVLKVTDYGFNDILEMLRL
SEEEPSEEELLWTAPELLRAPGGIRLGSFAGDVYSFAIIMQEVMVRGAPFCMMDLPAKEIIDRLKMPPPV
YRPVVSPEYAPAECLQLMKQCWAEASEQRPTFDEIFNQFKTFNKGKKTNIIDSMLRMLEQYSSNLEDLIR
ERTEELEIEKQKTEKLLTQMLPLSVAESLKKGCTVEPEGFDLVTLYFSDIVGFTTISAMSEPIEVVDLLN
DLYTLFDAIIGSHDVYKVETIGDAYMVASGLPKRNGSRHAAEIANMSLDILSSVGTFKMRHMPEVPVRIR
IGLHSGPVVAGVVGLTMPRYCLFGDTVNTASRMESTGLPYRIHVSLSTVTILQTLSEGYEVELRGRTELK
GKGTEETFWLVGKKGFTKPLPVPPPVGKDGQVGHGLQPAEIAAFQRRKAERQLVRNKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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