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Report for CCDS30522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30522.1 Public Mus musculus X Piga 23 108 98 CCDS HistoryNCBI Gene:18700Re-query CCDS DB by CCDS ID:30522.1Re-query CCDS DB by GeneID:18700See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033754.14 ENSMUSP00000033754.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033754.14Link to Ensembl Protein Viewer:ENSMUSP00000033754.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033754Re-query CCDS DB by Protein ID:ENSMUSP00000033754
Original member Current member EBI ENSMUST00000112255.7 ENSMUSP00000107874.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112255.7Link to Ensembl Protein Viewer:ENSMUSP00000107874.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112255Re-query CCDS DB by Protein ID:ENSMUSP00000107874
Original member NCBI NM_011081.3 NP_035211.2 Updated not alive Link to Nucleotide Sequence:NM_011081.3Link to Protein Sequence:NP_035211.2Re-query CCDS DB by Nucleotide ID:NM_011081Re-query CCDS DB by Protein ID:NP_035211
Current member NCBI NM_011081.4 NP_035211.2 Accepted alive Link to Nucleotide Sequence:NM_011081.4Link to Protein Sequence:NP_035211.2Re-query CCDS DB by Nucleotide ID:NM_011081Re-query CCDS DB by Protein ID:NP_035211Link to BLAST:NP_035211.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035211.2 485 Q64323 485 100% 0 0

Chromosomal Locations for CCDS 30522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 164422646 164423363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164427932 164428064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164428540 164428672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164428811 164429017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164431630 164431896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGCCAATAGAAGAGGAGGTGGGCAAGGCCAGCCTCCTTCAGTGTCGCCTTCCCCGGGTAGCTCTGGAA
ACCTTTCCGACGATAGGACCTGCACCCATAATATATGCATGGTGTCAGACTTTTTCTACCCAAACATGGG
AGGCGTGGAAAGCCACATTTACCAGCTCTCTCAGTGCCTCATTGAGAGAGGGCACAAGGTCATAACTGTC
ACCCATGCTTATGGAAATCGAAAGGGCGTCCGTTACCTCACCAATGGCCTCAAAGTTTACTATTTGCCTC
TGAGAGTCATGTACAACCAATCTACAGCCACGACTCTCTTTCACAGTCTGCCATTGCTCAGGTACATATT
TGTTCGGGAGAGAATTACGATAATCCATTCCCACAGTTCTTTCTCTGCCATGGCCCATGATGCTCTCTTC
CACGCCAAGACAATGGGGCTTCAGACAGTCTTCACAGACCATTCCCTTTTCGGATTTGCTGATGTCAGCT
CGGTGCTTACAAACAAGCTTCTAACTGTGTCTCTTTGTGACACAAACCACATCATTTGTGTCTCTTACAC
TAGTAAGGAGAACACTGTACTCAGAGCAGCACTGAATCCTGAAATAGTGTCCGTCATTCCTAACGCTGTA
GATCCTACTGACTTCACTCCAGACCCATTTAGGAGGCATGATAGTGTAATAACTGTTGTTGTTGTCAGCA
GACTTGTTTACAGAAAAGGGACTGATTTGCTTAGTGGTATAATACCTGAACTCTGTCAGAAATACCAAGA
ATTACATTTCCTAATTGGAGGAGAGGGACCAAAGAGAATCATTTTGGAAGAAGTACGGGAAAGATACCAA
CTACATGACAGGGTGCAGCTTTTGGGAGCTTTAGAACACAAGGATGTTAGAAATGTCTTAGTTCAAGGAC
ACATTTTTCTTAACACCTCCCTCACTGAAGCGTTCTGCATGGCCATCGTGGAAGCTGCCAGTTGTGGTTT
GCAGGTCGTCAGCACAAAGGTTGGTGGGATTCCCGAAGTCCTTCCGGAAAGTCTTATTATTCTCTGCGAG
CCTTCAGTAAAATCTTTGTGTGACGGTCTGGAAAAAGCCATTTTCCAAGTGAAGTCGGGGACATTGCCAG
CTCCAGAAAATATCCACAATGTAGTGAAGACTTTCTACACCTGGCGGAACGTGGCAGAGAGAACTGAAAA
GGTGTATGAGCGAGTGTCGAAGGAAACTGTTTTGCCAATGCACAAGAGATTGGACAGGCTCATCTCACAC
TGTGGCCCTGTGACGGGCTACATGTTTGCTTTGCTGGCTGTGCTCAGCTATCTCTTCCTCATTTTCCTGC
AGTGGATGACTCCAGACTCTTTCATTGATGTTGCAATAGATGCTACTGGGCCAAGGAGAGCCTGGACTCA
TCAATGGCCTCGTGATAAGAAAAGAGATGAGAATGATAAGATATCCCAAAGCAGGTAG

Translation (485 aa):
MANRRGGGQGQPPSVSPSPGSSGNLSDDRTCTHNICMVSDFFYPNMGGVESHIYQLSQCLIERGHKVITV
THAYGNRKGVRYLTNGLKVYYLPLRVMYNQSTATTLFHSLPLLRYIFVRERITIIHSHSSFSAMAHDALF
HAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAV
DPTDFTPDPFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQELHFLIGGEGPKRIILEEVRERYQ
LHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTKVGGIPEVLPESLIILCE
PSVKSLCDGLEKAIFQVKSGTLPAPENIHNVVKTFYTWRNVAERTEKVYERVSKETVLPMHKRLDRLISH
CGPVTGYMFALLAVLSYLFLIFLQWMTPDSFIDVAIDATGPRRAWTHQWPRDKKRDENDKISQSR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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