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Report for CCDS3084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3084.1 Public Homo sapiens 3 SLCO2A1 24 110 108 CCDS HistoryNCBI Gene:6578Re-query CCDS DB by CCDS ID:3084.1Re-query CCDS DB by GeneID:6578See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3084.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310926.11 ENSP00000311291.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310926.11Link to Ensembl Protein Viewer:ENSP00000311291.4Re-query CCDS DB by Nucleotide ID:ENST00000310926Re-query CCDS DB by Protein ID:ENSP00000311291
Original member Current member NCBI NM_005630.3 NP_005621.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005630.3Link to Protein Sequence:NP_005621.2Re-query CCDS DB by Nucleotide ID:NM_005630Re-query CCDS DB by Protein ID:NP_005621Link to BLAST:NP_005621.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005621.2 643 Q92959 643 100% 0 0

Chromosomal Locations for CCDS 3084.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 133934713 133934830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133935774 133935897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133938429 133938493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133942605 133942768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133945095 133945260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133947256 133947445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133948536 133948700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133948893 133948971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133951208 133951344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133953663 133953761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133954966 133955193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133973663 133973825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133979481 133979618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134029707 134029802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGGGGCTCCTGCCCAAGCTCGGCGCGTCCCAGGGCAGCGACACCTCTACTAGCCGAGCCGGCCGCTGTG
CCCGCTCGGTCTTCGGCAACATTAAGGTGTTTGTGCTCTGCCAAGGCCTCCTGCAGCTCTGCCAACTCCT
GTACAGCGCCTACTTCAAGAGCAGCCTCACCACCATTGAGAAGCGCTTTGGGCTCTCCAGTTCTTCATCG
GGTCTCATTTCCAGCTTGAATGAGATCAGCAATGCCATCCTCATCATCTTTGTCAGCTACTTTGGCAGCC
GGGTGCACCGTCCACGTCTGATTGGCATCGGAGGTCTCTTCCTGGCTGCAGGTGCCTTCATCCTCACCCT
CCCACACTTCCTCTCCGAGCCCTACCAGTACACCTTGGCCAGCACTGGGAACAACAGCCGCTTGCAGGCC
GAGCTCTGCCAGAAGCATTGGCAGGACCTGCCTCCCAGTAAGTGCCACAGCACCACCCAGAACCCCCAGA
AGGAGACCAGCAGCATGTGGGGCCTGATGGTGGTTGCCCAGCTGCTGGCTGGCATCGGGACAGTGCCTAT
TCAGCCATTTGGGATCTCCTATGTGGATGACTTCTCAGAGCCCAGCAACTCGCCCCTGTACATCTCCATC
TTATTTGCCATCTCTGTATTTGGACCGGCTTTCGGGTACCTGCTGGGCTCTGTCATGCTGCAGATCTTTG
TGGACTATGGCAGGGTCAACACAGCTGCAGTTAACTTGGTCCCGGGTGACCCCCGATGGATTGGAGCCTG
GTGGCTAGGCCTGCTCATTTCTTCAGCTTTATTGGTTCTCACCTCTTTCCCCTTTTTTTTCTTCCCTCGA
GCAATGCCCATAGGAGCAAAGAGGGCTCCTGCCACAGCAGATGAAGCAAGGAAGTTGGAGGAGGCCAAGT
CAAGAGGCTCCCTGGTGGATTTCATTAAACGGTTTCCATGCATCTTTCTGAGGCTCCTGATGAACTCACT
CTTCGTCCTGGTGGTCCTGGCCCAGTGCACCTTCTCCTCCGTCATTGCTGGCCTCTCCACCTTCCTCAAC
AAGTTCCTGGAGAAGCAGTATGGCACCTCAGCAGCCTATGCCAACTTCCTCATTGGTGCTGTGAACCTCC
CTGCTGCAGCCTTGGGGATGCTGTTTGGAGGAATCCTCATGAAGCGCTTTGTTTTCTCTCTACAAGCCAT
TCCCCGCATAGCTACCACCATCATCACCATCTCCATGATCCTTTGTGTTCCTTTGTTCTTCATGGGATGC
TCCACCCCAACTGTGGCCGAAGTCTACCCCCCTAGCACATCAAGTTCTATACATCCGCAGTCTCCTGCCT
GCCGCAGGGACTGCTCGTGCCCAGATTCTATCTTCCACCCGGTCTGTGGAGACAATGGAATCGAGTACCT
CTCCCCTTGCCATGCCGGCTGCAGCAACATCAACATGAGCTCTGCAACCTCCAAGCAACTGATCTATTTG
AACTGCAGCTGTGTGACCGGGGGATCCGCTTCAGCAAAGACAGGATCGTGCCCTGTCCCCTGTGCCCACT
TCCTGCTCCCGGCCATCTTCCTCATCTCCTTCGTGTCCCTGATAGCCTGCATCTCCCACAACCCCCTCTA
CATGATGGTTCTGCGTGTGGTGAACCAGGAGGAAAAGTCATTTGCCATCGGGGTGCAGTTCTTGTTGATG
CGCTTGCTGGCCTGGCTGCCATCTCCAGCCCTCTATGGCCTCACCATTGACCACTCCTGCATCCGGTGGA
ACTCGCTGTGCTTGGGGAGGCGAGGGGCCTGCGCCTACTATGACAACGATGCTCTCCGAGACAGGTACCT
GGGCCTGCAGATGGGCTACAAGGCGCTGGGCATGCTGCTGCTTTGCTTCATCAGCTGGAGGGTGAAGAAG
AACAAGGAGTACAACGTGCAGAAGGCGGCAGGCCTCATCTGA

Translation (643 aa):
MGLLPKLGASQGSDTSTSRAGRCARSVFGNIKVFVLCQGLLQLCQLLYSAYFKSSLTTIEKRFGLSSSSS
GLISSLNEISNAILIIFVSYFGSRVHRPRLIGIGGLFLAAGAFILTLPHFLSEPYQYTLASTGNNSRLQA
ELCQKHWQDLPPSKCHSTTQNPQKETSSMWGLMVVAQLLAGIGTVPIQPFGISYVDDFSEPSNSPLYISI
LFAISVFGPAFGYLLGSVMLQIFVDYGRVNTAAVNLVPGDPRWIGAWWLGLLISSALLVLTSFPFFFFPR
AMPIGAKRAPATADEARKLEEAKSRGSLVDFIKRFPCIFLRLLMNSLFVLVVLAQCTFSSVIAGLSTFLN
KFLEKQYGTSAAYANFLIGAVNLPAAALGMLFGGILMKRFVFSLQAIPRIATTIITISMILCVPLFFMGC
STPTVAEVYPPSTSSSIHPQSPACRRDCSCPDSIFHPVCGDNGIEYLSPCHAGCSNINMSSATSKQLIYL
NCSCVTGGSASAKTGSCPVPCAHFLLPAIFLISFVSLIACISHNPLYMMVLRVVNQEEKSFAIGVQFLLM
RLLAWLPSPALYGLTIDHSCIRWNSLCLGRRGACAYYDNDALRDRYLGLQMGYKALGMLLLCFISWRVKK
NKEYNVQKAAGLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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