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Report for CCDS3173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3173.1 Public Homo sapiens 3 SLC33A1 24 110 108 CCDS HistoryNCBI Gene:9197Re-query CCDS DB by CCDS ID:3173.1Re-query CCDS DB by GeneID:9197See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359479.7 ENSP00000352456.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359479.7Link to Ensembl Protein Viewer:ENSP00000352456.3Re-query CCDS DB by Nucleotide ID:ENST00000359479Re-query CCDS DB by Protein ID:ENSP00000352456
Original member Current member EBI ENST00000643144.2 ENSP00000496241.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000643144.2Link to Ensembl Protein Viewer:ENSP00000496241.1Re-query CCDS DB by Nucleotide ID:ENST00000643144Re-query CCDS DB by Protein ID:ENSP00000496241
Original member Current member NCBI NM_001190992.2 NP_001177921.1 Accepted alive Link to Nucleotide Sequence:NM_001190992.2Link to Protein Sequence:NP_001177921.1Re-query CCDS DB by Nucleotide ID:NM_001190992Re-query CCDS DB by Protein ID:NP_001177921Link to BLAST:NP_001177921.1
Original member Current member NCBI NM_004733.4 NP_004724.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004733.4Link to Protein Sequence:NP_004724.1Re-query CCDS DB by Nucleotide ID:NM_004733Re-query CCDS DB by Protein ID:NP_004724Link to BLAST:NP_004724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177921.1 549 O00400 549 100% 0 0
NP_004724.1 549 O00400 549 100% 0 0

Chromosomal Locations for CCDS 3173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 155828210 155828377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155829688 155829903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155833468 155833585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155833857 155834041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155842432 155842619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155853223 155853997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGTCACCCACCATCTCCCACAAGGACAGCAGCCGGCAACGGCGGCCAGGGAATTTCAGTCACTCTCTGG
AT
ATGAAGAGCGGTCCCCTGCCGCCAGGCGGTTGGGATGACAGTCATTTGGACTCAGCGGGCCGGGAAGG
G
GACAGAGAAGCTCTTCTGGGGGATACCGGCACTGGCGACTTCTTAAAAGCCCCACAGAGCTTCCGGGCC
GAA
CTAAGCAGCATTTTGCTACTACTCTTTCTTTACGTGCTTCAGGGTATTCCCCTGGGCTTGGCGGGAA
GC
ATCCCACTCATTTTGCAAAGCAAAAATGTTAGCTATACAGACCAAGCTTTCTTCAGTTTTGTCTTTTG
G
CCCTTCAGTCTCAAATTACTCTGGGCCCCGTTGGTTGATGCGGTCTACGTTAAGAACTTCGGTCGTCGC
AAA
TCTTGGCTTGTCCCGACACAGTATATACTAGGACTCTTCATGATCTATTTATCCACTCAGGTGGACC
GT
TTGCTTGGGAATACCGATGACAGAACACCCGACGTGATTGCTCTCACTGTGGCGTTCTTTTTGTTTGA
A
TTCTTGGCCGCCACTCAGGACATTGCCGTCGATGGTTGGGCGTTAACTATGTTATCCAGGGAAAATGTG
GGT
TATGCTTCTACTTGCAATTCGGTGGGCCAAACAGCGGGTTACTTTTTGGGCAATGTTTTGTTTTTGG
CC
CTTGAATCTGCCGACTTTTGTAACAAATATTTGCGGTTTCAGCCTCAACCCAGAGGAATCGTTACTCT
T
TCAGATTTCCTTTTTTTCTGGGGAACTGTATTTTTAATAACAACAACATTGGTTGCCCTTCTGAAAAAA
GAA
AACGAAGTATCAGTAGTAAAAGAAGAAACACAAGGGATCACAGATACTTACAAGCTGCTTTTTGCAA
TT
ATAAAAATGCCAGCAGTTCTGACATTTTGCCTTCTGATTCTAACTGCAAAGATTGGTTTTTCAGCAGC
A
GATGCTGTAACAGGACTGAAATTGGTAGAAGAGGGAGTACCCAAAGAACATTTAGCCTTATTGGCAGTT
CCA
ATGGTTCCTTTGCAGATAATACTGCCTCTGATTATCAGCAAATACACTGCAGGTCCCCAGCCATTAA
AC
ACATTTTACAAAGCCATGCCCTACAGATTATTGCTTGGGTTAGAATATGCCCTACTGGTTTGGTGGAC
T
CCTAAAGTAGAACATCAAGGGGGATTCCCTATATATTACTATATCGTAGTCCTGCTGAGTTATGCTTTA
CAT
CAGGTTACAGTGTACAGCATGTATGTTTCTATAATGGCTTTCAATGCAAAGGTTAGTGATCCACTTA
TT
GGAGGAACATACATGACCCTTTTAAATACCGTGTCCAATCTGGGAGGAAACTGGCCTTCTACAGTAGC
T
CTTTGGCTTGTAGATCCCCTCACAGTAAAAGAGTGTGTAGGAGCATCAAACCAGAATTGTCGAACACCT
GAT
GCTGTTGAGCTTTGCAAAAAACTGGGTGGCTCATGTGTTACAGCCCTGGATGGTTATTATGTGGAGT
CC
ATTATTTGTGTTTTCATTGGATTTGGTTGGTGGTTCTTTCTTGGTCCAAAATTTAAAAAGTTACAGGA
T
GAAGGATCATCTTCGTGGAAATGCAAAAGGAACAATTAA


Translation (549 aa):
MSPTISHKDSSRQRRPGNFSHSLDMKSGPLPPGGWDDSHLDSAGREGDREALLGDTGTGDFLKAPQSFRA
E
LSSILLLLFLYVLQGIPLGLAGSIPLILQSKNVSYTDQAFFSFVFWPFSLKLLWAPLVDAVYVKNFGRR
K
SWLVPTQYILGLFMIYLSTQVDRLLGNTDDRTPDVIALTVAFFLFEFLAATQDIAVDGWALTMLSRENV
G
YASTCNSVGQTAGYFLGNVLFLALESADFCNKYLRFQPQPRGIVTLS
DFLFFWGTVFLITTTLVALLKK
E
NEVSVVKEETQGITDTYKLLFAIIKMPAVLTFCLLILTAK
IGFSAADAVTGLKLVEEGVPKEHLALLAV
P
MVPLQIILPLIISKYTAGPQPLNTFYKAMPY
RLLLGLEYALLVWWTPKVEHQGGFPIYYYIVVLLSYAL
H
Q
VTVYSMYVSIMAFNAKVSDPLIGGTYMTLLNTVSNLGGNWPSTVALWLVDPLTVKECVGASNQNCRTP
D
AVE
LCKKLGGSCVTALDGYYVESIICVFIGFGWWFFLGPKFKKLQDEGSSSWKCKRNN



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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