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Report for CCDS31829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31829.1 Public Homo sapiens 12 RDH5 24 110 108 CCDS HistoryNCBI Gene:5959Re-query CCDS DB by CCDS ID:31829.1Re-query CCDS DB by GeneID:5959See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31829.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257895.10 ENSP00000257895.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257895.10Link to Ensembl Protein Viewer:ENSP00000257895.6Re-query CCDS DB by Nucleotide ID:ENST00000257895Re-query CCDS DB by Protein ID:ENSP00000257895
Original member Current member EBI ENST00000548082.1 ENSP00000447128.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548082.1Link to Ensembl Protein Viewer:ENSP00000447128.1Re-query CCDS DB by Nucleotide ID:ENST00000548082Re-query CCDS DB by Protein ID:ENSP00000447128
Original member Current member NCBI NM_001199771.3 NP_001186700.1 Accepted alive Link to Nucleotide Sequence:NM_001199771.3Link to Protein Sequence:NP_001186700.1Re-query CCDS DB by Nucleotide ID:NM_001199771Re-query CCDS DB by Protein ID:NP_001186700Link to BLAST:NP_001186700.1
Original member Current member NCBI NM_002905.5 NP_002896.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002905.5Link to Protein Sequence:NP_002896.2Re-query CCDS DB by Nucleotide ID:NM_002905Re-query CCDS DB by Protein ID:NP_002896Link to BLAST:NP_002896.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186700.1 318 Q92781 318 100% 0 0
NP_002896.2 318 Q92781 318 100% 0 0

Chromosomal Locations for CCDS 31829.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55721185 55721494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55721689 55721947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55723886 55724049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55724322 55724545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTGGCTGCCTCTTCTGCTGGGTGCCTTACTCTGGGCAGTGCTGTGGTTGCTCAGGGACCGGCAGAGCC
TGCCCGCCAGCAATGCCTTTGTCTTCATCACCGGCTGTGACTCAGGCTTTGGGCGCCTTCTGGCACTGCA
GCTGGACCAGAGAGGCTTCCGAGTCCTGGCCAGCTGCCTGACCCCCTCCGGGGCCGAGGACCTGCAGCGG
GTGGCCTCCTCCCGCCTCCACACCACCCTGTTGGATATCACTGATCCCCAGAGCGTCCAGCAGGCAGCCA
AGTGGGTGGAGATGCACGTTAAGGAAGCAGGGCTTTTTGGTCTGGTGAATAATGCTGGTGTGGCTGGTAT
CATCGGACCCACACCATGGCTGACCCGGGACGATTTCCAGCGGGTGCTGAATGTGAACACAATGGGTCCC
ATCGGGGTCACCCTTGCCCTGCTGCCTCTGCTGCAGCAAGCCCGGGGCCGGGTGATCAACATCACCAGCG
TCCTGGGTCGCCTGGCAGCCAATGGTGGGGGCTACTGTGTCTCCAAATTTGGCCTGGAGGCCTTCTCTGA
CAGCCTGAGGCGGGATGTAGCTCATTTTGGGATACGAGTCTCCATCGTGGAGCCTGGCTTCTTCCGAACC
CCTGTGACCAACCTGGAGAGTCTGGAGAAAACCCTGCAGGCCTGCTGGGCACGGCTGCCTCCTGCCACAC
AGGCCCACTATGGGGGGGCCTTCCTCACCAAGTACCTGAAAATGCAACAGCGCATCATGAACCTGATCTG
TGACCCGGACCTAACCAAGGTGAGCCGATGCCTGGAGCATGCCCTGACTGCTCGACACCCCCGAACCCGC
TACAGCCCAGGTTGGGATGCCAAGCTGCTCTGGCTGCCTGCCTCCTACCTGCCAGCCAGCCTGGTGGATG
CTGTGCTCACCTGGGTCCTTCCCAAGCCTGCCCAAGCAGTCTACTGA

Translation (318 aa):
MWLPLLLGALLWAVLWLLRDRQSLPASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQR
VASSRLHTTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNTMGP
IGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFGIRVSIVEPGFFRT
PVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLICDPDLTKVSRCLEHALTARHPRTR
YSPGWDAKLLWLPASYLPASLVDAVLTWVLPKPAQAVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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