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Report for CCDS32528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32528.1 Public Homo sapiens 17 PAFAH1B1 24 110 108 CCDS HistoryNCBI Gene:5048Re-query CCDS DB by CCDS ID:32528.1Re-query CCDS DB by GeneID:5048See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32528.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397195.10 ENSP00000380378.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397195.10Link to Ensembl Protein Viewer:ENSP00000380378.4Re-query CCDS DB by Nucleotide ID:ENST00000397195Re-query CCDS DB by Protein ID:ENSP00000380378
Original member Current member EBI ENST00000675390.1 ENSP00000501969.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675390.1Link to Ensembl Protein Viewer:ENSP00000501969.1Re-query CCDS DB by Nucleotide ID:ENST00000675390Re-query CCDS DB by Protein ID:ENSP00000501969
Original member Current member EBI ENST00000675331.1 ENSP00000502031.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675331.1Link to Ensembl Protein Viewer:ENSP00000502031.1Re-query CCDS DB by Nucleotide ID:ENST00000675331Re-query CCDS DB by Protein ID:ENSP00000502031
Original member Current member EBI ENST00000676188.1 ENSP00000502577.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676188.1Link to Ensembl Protein Viewer:ENSP00000502577.1Re-query CCDS DB by Nucleotide ID:ENST00000676188Re-query CCDS DB by Protein ID:ENSP00000502577
Original member Current member EBI ENST00000676098.1 ENSP00000502735.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676098.1Link to Ensembl Protein Viewer:ENSP00000502735.1Re-query CCDS DB by Nucleotide ID:ENST00000676098Re-query CCDS DB by Protein ID:ENSP00000502735
Original member Current member EBI ENST00000675202.1 ENSP00000502843.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675202.1Link to Ensembl Protein Viewer:ENSP00000502843.1Re-query CCDS DB by Nucleotide ID:ENST00000675202Re-query CCDS DB by Protein ID:ENSP00000502843
Original member Current member NCBI NM_000430.4 NP_000421.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000430.4Link to Protein Sequence:NP_000421.1Re-query CCDS DB by Nucleotide ID:NM_000430Re-query CCDS DB by Protein ID:NP_000421Link to BLAST:NP_000421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000421.1 410 P43034-1 410 100% 0 0

Chromosomal Locations for CCDS 32528.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 2638289 2638320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2665372 2665456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2666016 2666090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2666992 2667198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2670163 2670331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2672655 2672757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2674060 2674288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2676505 2676606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2680164 2680320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2681729 2681802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGTGCTGTCCCAGAGACAACGAGATGAACTAAATCGAGCTATAGCAGATTATCTTCGTTCAAATGGCT
ATGAAGAGGCATATTCAGTTTTTAAAAAGGAAGCTGAATTAGATGTGAATGAAGAATTAGATAAAAAGTA
TGCTGGTCTTTTGGAAAAAAAATGGACATCTGTTATTAGATTACAAAAGAAGGTTATGGAATTAGAATCA
AAGCTAAATGAAGCAAAAGAAGAATTTACGTCAGGTGGACCTCTTGGTCAGAAACGAGACCCAAAAGAAT
GGATTCCCCGTCCGCCAGAAAAATATGCATTGAGTGGTCACAGGAGTCCAGTCACTCGAGTCATTTTCCA
TCCTGTGTTCAGTGTTATGGTCTCTGCTTCAGAGGATGCTACAATTAAGGTGTGGGATTATGAGACTGGA
GATTTTGAACGAACTCTTAAAGGACATACAGACTCTGTACAGGACATTTCATTCGACCACAGCGGCAAGC
TTCTGGCTTCCTGTTCTGCAGATATGACCATTAAACTATGGGATTTTCAGGGCTTTGAATGCATCAGAAC
CATGCACGGCCATGACCACAATGTTTCTTCAGTAGCCATCATGCCCAATGGAGATCATATAGTGTCTGCC
TCAAGGGATAAAACTATAAAAATGTGGGAAGTGCAAACTGGCTACTGTGTGAAGACATTCACAGGACACA
GAGAATGGGTACGTATGGTACGGCCAAATCAAGATGGCACTCTGATAGCCAGCTGTTCCAATGACCAGAC
TGTGCGTGTATGGGTCGTAGCAACAAAGGAATGCAAGGCTGAGCTCCGAGAGCATGAGCATGTGGTAGAA
TGCATTTCCTGGGCTCCAGAAAGCTCATATTCCTCCATCTCTGAAGCAACAGGATCTGAGACTAAAAAAA
GTGGTAAACCTGGGCCATTCTTGCTGTCTGGATCCAGAGACAAGACTATTAAGATGTGGGATGTCAGTAC
TGGCATGTGCCTTATGACCCTCGTGGGTCATGATAACTGGGTACGTGGAGTTCTGTTCCATTCTGGGGGG
AAGTTTATTTTGAGTTGTGCTGATGACAAGACCCTACGCGTATGGGATTACAAGAACAAGCGATGCATGA
AGACCCTCAATGCGCATGAACACTTTGTTACCTCCTTGGATTTCCACAAGACGGCACCCTATGTCGTCAC
TGGCAGCGTAGATCAAACAGTAAAAGTGTGGGAGTGCCGTTGA

Translation (410 aa):
MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDVNEELDKKYAGLLEKKWTSVIRLQKKVMELES
KLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG
DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSA
SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE
CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG
KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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