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Report for CCDS32689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32689.1 Public Homo sapiens 17 LPO 24 110 108 CCDS HistoryNCBI Gene:4025Re-query CCDS DB by CCDS ID:32689.1Re-query CCDS DB by GeneID:4025See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32689.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262290.9 ENSP00000262290.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262290.9Link to Ensembl Protein Viewer:ENSP00000262290.4Re-query CCDS DB by Nucleotide ID:ENST00000262290Re-query CCDS DB by Protein ID:ENSP00000262290
Original member Current member NCBI NM_006151.3 NP_006142.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006151.3Link to Protein Sequence:NP_006142.1Re-query CCDS DB by Nucleotide ID:NM_006151Re-query CCDS DB by Protein ID:NP_006142Link to BLAST:NP_006142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006142.1 712 P22079-1 712 100% 0 0

Chromosomal Locations for CCDS 32689.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 58242980 58243055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58243994 58244081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58247478 58247638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58249060 58249177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58249566 58249695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58250415 58250621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58252182 58252506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58254811 58254971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58264722 58264974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58266153 58266326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58267349 58267586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58267787 58267994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGAGGGTCCTTCTCCATCTCCCAGCCCTCCTGGCTTCCCTCATCTTGCTTCAGGCTGCAGCATCTACCA
CAAGAGCGCAGACTACCAGAACCTCTGCCATCTCCGATACTGTGAGTCAGGCCAAGGTCCAAGTCAACAA
GGCCTTCCTGGACTCCCGAACCAGGCTGAAGACCGCCATGAGCTCTGAGACTCCCACCAGCCGACAGCTC
TCAGAATACCTCAAGCATGCCAAAGGCCGGACGCGCACAGCCATCCGCAATGGACAGGTGTGGGAGGAGT
CTTTAAAGAGACTGAGGCAGAAGGCATCCTTGACCAATGTCACAGATCCCAGCCTGGACTTGACTTCACT
GTCTCTGGAGGTGGGCTGTGGTGCTCCTGCTCCCGTGGTGAGATGCGACCCGTGCAGCCCTTACCGCACC
ATTACGGGAGACTGCAATAACAGGAGGAAGCCTGCGCTGGGCGCCGCCAACAGGGCTCTGGCGCGCTGGC
TGCCCGCGGAGTACGAGGACGGGCTCTCCCTGCCCTTCGGCTGGACGCCGGGGAAGACGCGCAACGGCTT
CCCTCTCCCGCTGGCCCGGGAGGTATCTAACAAGATTGTTGGCTATCTGAATGAGGAGGGTGTTCTGGAC
CAAAACAGGTCCCTGCTCTTCATGCAGTGGGGTCAGATTGTGGATCATGACCTGGACTTTGCCCCTGACA
CCGAGCTGGGGAGTAGCGAGTACTCCAAAGCCCAGTGTGATGAGTACTGTATCCAGGGAGACAACTGCTT
CCCCATCATGTTCCCACCCAATGACCCCAAGGCGGGGACTCAAGGGAAATGCATGCCTTTCTTCCGAGCT
GGGTTCGTCTGCCCCACTCCACCCTACAAGTCCCTGGCCCGAGAGCAGATCAACGCTCTGACCTCCTTCC
TGGATGCCAGCTTTGTGTACAGCTCCGAGCCAAGCCTGGCCAGCCGCCTCCGCAACCTCAGCAGCCCCCT
GGGCCTCATGGCTGTCAACCAGGAGGTCTCAGACCATGGACTACCCTACCTGCCCTATGACAGCAAGAAG
CCAAGCCCCTGTGAGTTCATCAACACCACTGCCCGTGTGCCCTGCTTCCTGGCAGGAGATTCTCGAGCCT
CAGAGCATATTCTGCTGGCCACATCCCACACCCTCTTTCTCCGCGAGCATAACCGGCTGGCCAGAGAACT
AAAGAGACTCAACCCTCAGTGGGATGGAGAGAAGCTCTACCAGGAAGCCCGGAAAATCCTGGGAGCCTTC
GTGCAGATTATCACCTTTAGGGACTACCTACCCATTTTGCTAGGTGACCACATGCAGAAGTGGATACCCC
CATATCAAGGCTACAGTGAATCTGTGGATCCCAGAATTTCCAATGTCTTCACCTTCGCCTTCCGCTTTGG
CCACTTGGAGGTCCCCTCTAGTATGTTCCGCCTGGATGAGAATTATCAGCCATGGGGGCCAGAACCAGAA
CTCCCCCTCCACACCCTCTTCTTCAACACTTGGAGGATGGTCAAAGATGGTGGAATTGATCCTCTGGTGC
GGGGCCTGCTGGCCAAGAAATCCAAGCTGATGAAACAGAATAAAATGATGACTGGAGAGCTGCGCAACAA
GCTTTTCCAGCCAACTCACAGGATCCATGGCTTTGACCTGGCTGCCATCAACACACAGCGTTGCCGGGAC
CATGGGCAACCTGGGTACAATTCCTGGAGAGCCTTCTGTGACCTCTCACAGCCGCAGACACTAGAGGAGT
TGAACACAGTGCTGAAGAGCAAGATGCTGGCCAAGAAGTTACTGGGTCTCTACGGGACCCCTGACAACAT
CGACATCTGGATAGGGGCCATTGCTGAGCCGCTGGTGGAAAGGGGTCGGGTGGGGCCTCTCCTGGCCTGC
CTCTTGGGCAAGCAGTTCCAGCAGATCCGTGATGGAGACAGGTTCTGGTGGGAAAACCCTGGGGTCTTCA
CGAACGAGCAGAAGGACTCTCTACAGAAAATGTCCTTCTCACGCCTTGTCTGTGACAACACCCGCATCAC
CAAGGTCCCACGGGACCCATTCTGGGCCAACAGCTACCCCTATGACTTCGTGGATTGCTCAGCCATCGAC
AAGCTGGACCTGTCACCCTGGGCCTCAGTGAAGAATTAG

Translation (712 aa):
MRVLLHLPALLASLILLQAAASTTRAQTTRTSAISDTVSQAKVQVNKAFLDSRTRLKTAMSSETPTSRQL
SEYLKHAKGRTRTAIRNGQVWEESLKRLRQKASLTNVTDPSLDLTSLSLEVGCGAPAPVVRCDPCSPYRT
ITGDCNNRRKPALGAANRALARWLPAEYEDGLSLPFGWTPGKTRNGFPLPLAREVSNKIVGYLNEEGVLD
QNRSLLFMQWGQIVDHDLDFAPDTELGSSEYSKAQCDEYCIQGDNCFPIMFPPNDPKAGTQGKCMPFFRA
GFVCPTPPYKSLAREQINALTSFLDASFVYSSEPSLASRLRNLSSPLGLMAVNQEVSDHGLPYLPYDSKK
PSPCEFINTTARVPCFLAGDSRASEHILLATSHTLFLREHNRLARELKRLNPQWDGEKLYQEARKILGAF
VQIITFRDYLPILLGDHMQKWIPPYQGYSESVDPRISNVFTFAFRFGHLEVPSSMFRLDENYQPWGPEPE
LPLHTLFFNTWRMVKDGGIDPLVRGLLAKKSKLMKQNKMMTGELRNKLFQPTHRIHGFDLAAINTQRCRD
HGQPGYNSWRAFCDLSQPQTLEELNTVLKSKMLAKKLLGLYGTPDNIDIWIGAIAEPLVERGRVGPLLAC
LLGKQFQQIRDGDRFWWENPGVFTNEQKDSLQKMSFSRLVCDNTRITKVPRDPFWANSYPYDFVDCSAID
KLDLSPWASVKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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