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Report for CCDS3285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3285.1 Public Homo sapiens 3 ST6GAL1 24 110 108 CCDS HistoryNCBI Gene:6480Re-query CCDS DB by CCDS ID:3285.1Re-query CCDS DB by GeneID:6480See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3285.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000169298.8 ENSP00000169298.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000169298.8Link to Ensembl Protein Viewer:ENSP00000169298.3Re-query CCDS DB by Nucleotide ID:ENST00000169298Re-query CCDS DB by Protein ID:ENSP00000169298
Original member Current member EBI ENST00000448044.5 ENSP00000389337.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448044.5Link to Ensembl Protein Viewer:ENSP00000389337.1Re-query CCDS DB by Nucleotide ID:ENST00000448044Re-query CCDS DB by Protein ID:ENSP00000389337
Original member Current member EBI ENST00000416235.6 ENSP00000414504.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416235.6Link to Ensembl Protein Viewer:ENSP00000414504.2Re-query CCDS DB by Nucleotide ID:ENST00000416235Re-query CCDS DB by Protein ID:ENSP00000414504
Original member Current member EBI ENST00000677292.1 ENSP00000503457.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677292.1Link to Ensembl Protein Viewer:ENSP00000503457.1Re-query CCDS DB by Nucleotide ID:ENST00000677292Re-query CCDS DB by Protein ID:ENSP00000503457
Original member Current member EBI ENST00000676633.1 ENSP00000504448.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676633.1Link to Ensembl Protein Viewer:ENSP00000504448.1Re-query CCDS DB by Nucleotide ID:ENST00000676633Re-query CCDS DB by Protein ID:ENSP00000504448
Original member Current member NCBI NM_001353916.2 NP_001340845.1 Accepted alive Link to Nucleotide Sequence:NM_001353916.2Link to Protein Sequence:NP_001340845.1Re-query CCDS DB by Nucleotide ID:NM_001353916Re-query CCDS DB by Protein ID:NP_001340845Link to BLAST:NP_001340845.1
Original member Current member NCBI NM_003032.3 NP_003023.1 Accepted alive Link to Nucleotide Sequence:NM_003032.3Link to Protein Sequence:NP_003023.1Re-query CCDS DB by Nucleotide ID:NM_003032Re-query CCDS DB by Protein ID:NP_003023Link to BLAST:NP_003023.1
Original member Current member NCBI NM_173216.2 NP_775323.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173216.2Link to Protein Sequence:NP_775323.1Re-query CCDS DB by Nucleotide ID:NM_173216Re-query CCDS DB by Protein ID:NP_775323Link to BLAST:NP_775323.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340845.1 406 P15907-1 406 100% 0 0
NP_003023.1 406 P15907-1 406 100% 0 0
NP_775323.1 406 P15907-1 406 100% 0 0

Chromosomal Locations for CCDS 3285.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 187042704 187043310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 187051249 187051346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 187072849 187072947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 187074159 187074333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 187075562 187075803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGATTCACACCAACCTGAAGAAAAAGTTCAGCTGCTGCGTCCTGGTCTTTCTTCTGTTTGCAGTCATCT
GTGTGTGGAAGGAAAAGAAGAAAGGGAGTTACTATGATTCCTTTAAATTGCAAACCAAGGAATTCCAGGT
GTTAAAGAGTCTGGGGAAATTGGCCATGGGGTCTGATTCCCAGTCTGTATCCTCAAGCAGCACCCAGGAC
CCCCACAGGGGCCGCCAGACCCTCGGCAGTCTCAGAGGCCTAGCCAAGGCCAAACCAGAGGCCTCCTTCC
AGGTGTGGAACAAGGACAGCTCTTCCAAAAACCTTATCCCTAGGCTGCAAAAGATCTGGAAGAATTACCT
AAGCATGAACAAGTACAAAGTGTCCTACAAGGGGCCAGGACCAGGCATCAAGTTCAGTGCAGAGGCCCTG
CGCTGCCACCTCCGGGACCATGTGAATGTATCCATGGTAGAGGTCACAGATTTTCCCTTCAATACCTCTG
AATGGGAGGGTTATCTGCCCAAGGAGAGCATTAGGACCAAGGCTGGGCCTTGGGGCAGGTGTGCTGTTGT
GTCGTCAGCGGGATCTCTGAAGTCCTCCCAACTAGGCAGAGAAATCGATGATCATGACGCAGTCCTGAGG
TTTAATGGGGCACCCACAGCCAACTTCCAACAAGATGTGGGCACAAAAACTACCATTCGCCTGATGAACT
CTCAGTTGGTTACCACAGAGAAGCGCTTCCTCAAAGACAGTTTGTACAATGAAGGAATCCTAATTGTATG
GGACCCATCTGTATACCACTCAGATATCCCAAAGTGGTACCAGAATCCGGATTATAATTTCTTTAACAAC
TACAAGACTTATCGTAAGCTGCACCCCAATCAGCCCTTTTACATCCTCAAGCCCCAGATGCCTTGGGAGC
TATGGGACATTCTTCAAGAAATCTCCCCAGAAGAGATTCAGCCAAACCCCCCATCCTCTGGGATGCTTGG
TATCATCATCATGATGACGCTGTGTGACCAGGTGGATATTTATGAGTTCCTCCCATCCAAGCGCAAGACT
GACGTGTGCTACTACTACCAGAAGTTCTTCGATAGTGCCTGCACGATGGGTGCCTACCACCCGCTGCTCT
ATGAGAAGAATTTGGTGAAGCATCTCAACCAGGGCACAGATGAGGACATCTACCTGCTTGGAAAAGCCAC
ACTGCCTGGCTTCCGGACCATTCACTGCTAA

Translation (406 aa):
MIHTNLKKKFSCCVLVFLLFAVICVWKEKKKGSYYDSFKLQTKEFQVLKSLGKLAMGSDSQSVSSSSTQD
PHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMNKYKVSYKGPGPGIKFSAEAL
RCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGPWGRCAVVSSAGSLKSSQLGREIDDHDAVLR
FNGAPTANFQQDVGTKTTIRLMNSQLVTTEKRFLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNN
YKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKT
DVCYYYQKFFDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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