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Report for CCDS33065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33065.1 Public Homo sapiens 19 SLC8A2 24 110 108 CCDS HistoryNCBI Gene:6543Re-query CCDS DB by CCDS ID:33065.1Re-query CCDS DB by GeneID:6543See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33065.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000236877.11 ENSP00000236877.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000236877.11Link to Ensembl Protein Viewer:ENSP00000236877.5Re-query CCDS DB by Nucleotide ID:ENST00000236877Re-query CCDS DB by Protein ID:ENSP00000236877
Original member Current member NCBI NM_015063.3 NP_055878.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015063.3Link to Protein Sequence:NP_055878.1Re-query CCDS DB by Nucleotide ID:NM_015063Re-query CCDS DB by Protein ID:NP_055878Link to BLAST:NP_055878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055878.1 921 Q9UPR5 921 100% 0 0

Chromosomal Locations for CCDS 33065.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47430089 47430465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47432167 47432445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47437462 47437561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47437849 47437973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47441169 47441186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47441337 47441440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47447809 47448231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47456930 47457594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47465729 47466403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2766 nt):
ATGGCTCCCCTGGCCTTGGTGGGGGTCACACTCCTCCTGGCGGCTCCCCCATGCTCCGGGGCAGCCACCC
CAACCCCCTCCCTGCCGCCTCCCCCGGCCAATGACAGCGACACCAGCACAGGGGGCTGCCAGGGGTCCTA
CCGCTGCCAGCCGGGGGTGCTGCTGCCCGTGTGGGAGCCCGACGACCCGTCGCTGGGTGACAAGGCGGCA
CGGGCAGTGGTGTACTTTGTGGCCATGGTCTACATGTTTCTGGGAGTGTCCATCATCGCCGACCGTTTCA
TGGCGGCCATCGAGGTCATCACGTCAAAAGAGAAGGAGATCACCATCACCAAGGCCAACGGTGAGACCAG
CGTGGGCACCGTTCGCATCTGGAATGAGACGGTGTCCAACCTCACGCTCATGGCCCTGGGCTCCTCCGCA
CCTGAGATCCTGCTGTCAGTCATCGAAGTCTGCGGCCACAACTTCCAGGCGGGTGAGCTGGGCCCAGGCA
CCATCGTGGGCAGCGCTGCCTTCAACATGTTTGTGGTCATCGCCGTGTGCATCTACGTCATCCCAGCCGG
CGAGAGCCGCAAGATCAAGCACCTGAGAGTCTTCTTTGTCACTGCCTCTTGGAGCATCTTCGCCTATGTC
TGGCTTTATCTCATCCTTGCTGTTTTTTCCCCCGGTGTGGTCCAGGTGTGGGAGGCGCTGCTGACCCTGG
TCTTCTTCCCGGTGTGCGTGGTATTCGCCTGGATGGCCGACAAGCGGCTGCTCTTCTACAAGTACGTGTA
CAAGCGCTACCGCACCGACCCACGCAGCGGCATCATCATAGGCGCCGAGGGCGACCCCCCGAAGAGCATC
GAGCTGGACGGCACGTTCGTGGGCGCCGAGGCCCCAGGTGAGCTGGGCGGCCTGGGCCCGGGCCCCGCCG
AGGCGCGCGAGCTGGACGCCAGCCGCCGCGAGGTCATCCAGATCCTCAAGGACCTCAAGCAGAAGCACCC
GGACAAGGATCTGGAGCAGCTGGTGGGCATCGCCAACTACTACGCGCTGCTGCACCAGCAGAAGAGCCGC
GCCTTCTACCGCATCCAGGCCACGCGGCTGATGACCGGCGCCGGGAACGTGCTGCGCAGACACGCGGCGG
ACGCCTCGCGCAGGGCGGCGCCGGCCGAGGGCGCGGGCGAGGACGAAGACGACGGCGCCAGCCGCATCTT
CTTCGAGCCTAGCCTCTACCACTGCCTGGAGAACTGCGGCTCCGTGCTGCTGTCCGTCACGTGCCAGGGC
GGCGAGGGCAACAGCACCTTCTACGTGGACTACCGCACTGAGGACGGCTCTGCCAAGGCGGGCTCCGACT
ACGAGTACAGCGAGGGCACGCTGGTGTTCAAACCAGGCGAGACGCAGAAGGAGCTGCGCATCGGCATCAT
CGACGACGACATCTTCGAGGAGGACGAGCATTTCTTCGTGCGGCTGCTGAACCTGCGCGTGGGCGACGCG
CAGGGCATGTTCGAGCCGGACGGCGGCGGGCGGCCCAAGGGGCGGCTGGTGGCGCCGCTGCTGGCCACCG
TCACCATCCTGGACGACGACCACGCAGGCATCTTCTCCTTCCAGGACCGCCTGCTGCACGTGAGCGAGTG
CATGGGCACCGTGGACGTGCGCGTCGTGCGCAGCTCGGGCGCGCGCGGCACCGTGCGCCTTCCCTACCGC
ACGGTGGACGGCACGGCGCGCGGCGGCGGCGTGCACTACGAGGACGCGTGCGGAGAGCTGGAGTTTGGCG
ACGACGAGACCATGAAAACTCTTCAGGTGAAGATAGTTGATGACGAGGAATATGAGAAAAAGGATAATTT
CTTCATTGAGCTGGGCCAGCCCCAGTGGCTTAAGCGAGGGATTTCAGCTCTGCTACTCAATCAAGGGGAT
GGGGACAGGAAGCTAACAGCCGAGGAGGAGGAGGCTCGGAGGATAGCAGAGATGGGCAAGCCAGTTCTTG
GGGAGAACTGCCGGCTGGAGGTCATCATCGAGGAGTCATATGATTTTAAGAACACGGTGGATAAACTCAT
CAAGAAAACGAACTTGGCCTTGGTAATTGGGACCCATTCATGGAGGGAGCAGTTTTTAGAGGCAATTACG
GTGAGCGCAGGGGACGAGGAGGAGGAGGAGGACGGGTCCCGGGAGGAGCGGCTGCCGTCGTGCTTTGACT
ACGTGATGCACTTCCTGACGGTGTTCTGGAAGGTGCTCTTCGCCTGTGTGCCCCCCACCGAGTACTGCCA
CGGCTGGGCCTGCTTTGGTGTCTCCATCCTGGTCATCGGCCTGCTCACCGCCCTCATTGGGGACCTCGCC
TCCCACTTCGGCTGCACCGTTGGCCTCAAGGACTCTGTCAATGCTGTTGTCTTCGTTGCCCTGGGCACCT
CCATCCCTGACACGTTCGCCAGCAAGGTGGCGGCGCTGCAGGACCAGTGCGCCGACGCGTCCATCGGCAA
CGTGACCGGCTCCAACGCGGTGAACGTGTTCCTTGGCCTGGGCGTCGCCTGGTCTGTGGCCGCCGTGTAC
TGGGCGGTGCAGGGCCGCCCCTTCGAGGTGCGCACTGGCACGCTGGCCTTCTCCGTCACGCTCTTCACCG
TCTTCGCCTTCGTGGGCATTGCCGTGCTGCTGTACCGGCGCCGGCCGCACATCGGCGGCGAGCTGGGCGG
CCCGCGCGGACCCAAGCTCGCCACCACCGCGCTCTTCCTGGGCCTCTGGCTCCTGTACATCCTCTTCGCC
AGCCTGGAGGCGTACTGCCACATCCGGGGCTTCTAG

Translation (921 aa):
MAPLALVGVTLLLAAPPCSGAATPTPSLPPPPANDSDTSTGGCQGSYRCQPGVLLPVWEPDDPSLGDKAA
RAVVYFVAMVYMFLGVSIIADRFMAAIEVITSKEKEITITKANGETSVGTVRIWNETVSNLTLMALGSSA
PEILLSVIEVCGHNFQAGELGPGTIVGSAAFNMFVVIAVCIYVIPAGESRKIKHLRVFFVTASWSIFAYV
WLYLILAVFSPGVVQVWEALLTLVFFPVCVVFAWMADKRLLFYKYVYKRYRTDPRSGIIIGAEGDPPKSI
ELDGTFVGAEAPGELGGLGPGPAEARELDASRREVIQILKDLKQKHPDKDLEQLVGIANYYALLHQQKSR
AFYRIQATRLMTGAGNVLRRHAADASRRAAPAEGAGEDEDDGASRIFFEPSLYHCLENCGSVLLSVTCQG
GEGNSTFYVDYRTEDGSAKAGSDYEYSEGTLVFKPGETQKELRIGIIDDDIFEEDEHFFVRLLNLRVGDA
QGMFEPDGGGRPKGRLVAPLLATVTILDDDHAGIFSFQDRLLHVSECMGTVDVRVVRSSGARGTVRLPYR
TVDGTARGGGVHYEDACGELEFGDDETMKTLQVKIVDDEEYEKKDNFFIELGQPQWLKRGISALLLNQGD
GDRKLTAEEEEARRIAEMGKPVLGENCRLEVIIEESYDFKNTVDKLIKKTNLALVIGTHSWREQFLEAIT
VSAGDEEEEEDGSREERLPSCFDYVMHFLTVFWKVLFACVPPTEYCHGWACFGVSILVIGLLTALIGDLA
SHFGCTVGLKDSVNAVVFVALGTSIPDTFASKVAALQDQCADASIGNVTGSNAVNVFLGLGVAWSVAAVY
WAVQGRPFEVRTGTLAFSVTLFTVFAFVGIAVLLYRRRPHIGGELGGPRGPKLATTALFLGLWLLYILFA
SLEAYCHIRGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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