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Report for CCDS3314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3314.1 Public Homo sapiens 3 SLC51A 24 110 108 CCDS HistoryNCBI Gene:200931Re-query CCDS DB by CCDS ID:3314.1Re-query CCDS DB by GeneID:200931See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3314.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296327.10 ENSP00000296327.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296327.10Link to Ensembl Protein Viewer:ENSP00000296327.5Re-query CCDS DB by Nucleotide ID:ENST00000296327Re-query CCDS DB by Protein ID:ENSP00000296327
Original member Current member NCBI NM_152672.6 NP_689885.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152672.6Link to Protein Sequence:NP_689885.4Re-query CCDS DB by Nucleotide ID:NM_152672Re-query CCDS DB by Protein ID:NP_689885Link to BLAST:NP_689885.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689885.4 340 Q86UW1 340 100% 0 0

Chromosomal Locations for CCDS 3314.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 196216713 196216750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196217842 196217936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196226965 196227119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196227664 196227737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196228115 196228273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196228809 196228920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196229915 196230061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196232419 196232524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196233063 196233199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGAGCCGGGCAGGACCCAGATAAAGCTTGACCCCAGGTACACAGCAGATCTTCTGGAGGTGCTGAAGA
CCAATTACGGCATCCCCTCCGCCTGCTTCTCTCAGCCTCCCACAGCAGCCCAACTCCTGAGAGCCCTGGG
CCCTGTGGAACTTGCCCTCACTAGCATCCTGACCTTGCTGGCGCTGGGCTCCATTGCCATCTTCCTGGAG
GATGCCGTCTACCTGTACAAGAACACCCTTTGCCCCATCAAGAGGCGGACTCTGCTCTGGAAGAGCTCGG
CACCCACGGTGGTGTCTGTGCTGTGCTGCTTTGGTCTCTGGATCCCTCGTTCCCTGGTGCTGGTGGAAAT
GACCATCACCTCGTTTTATGCCGTGTGCTTTTACCTGCTGATGCTGGTCATGGTGGAAGGCTTTGGGGGG
AAGGAGGCAGTGCTGAGGACGCTGAGGGACACCCCGATGATGGTCCACACAGGCCCCTGCTGCTGCTGCT
GCCCCTGCTGTCCACGGCTGCTGCTCACCAGGAAGAAGCTTCAGCTGCTGATGTTGGGCCCTTTCCAATA
CGCCTTCTTGAAGATAACGCTGACCCTGGTGGGCCTGTTTCTCGTCCCCGACGGCATCTATGACCCAGCA
GACATTTCTGAGGGGAGCACAGCTCTATGGATCAACACTTTCCTTGGCGTGTCCACACTGCTGGCTCTCT
GGACCCTGGGCATCATTTCCCGTCAAGCCAGGCTACACCTGGGTGAGCAGAACATGGGAGCCAAATTTGC
TCTGTTCCAGGTTCTCCTCATCCTGACTGCCCTACAGCCCTCCATCTTCTCAGTCTTGGCCAACGGTGGG
CAGATTGCTTGTTCGCCTCCCTATTCCTCTAAAACCAGGTCTCAAGTGATGAATTGCCACCTCCTCATAC
TGGAGACTTTTCTAATGACTGTGCTGACACGAATGTACTACCGAAGGAAAGACCACAAGGTTGGGTATGA
AACTTTCTCTTCTCCAGACCTGGACTTGAACCTCAAAGCCTAA

Translation (340 aa):
MEPGRTQIKLDPRYTADLLEVLKTNYGIPSACFSQPPTAAQLLRALGPVELALTSILTLLALGSIAIFLE
DAVYLYKNTLCPIKRRTLLWKSSAPTVVSVLCCFGLWIPRSLVLVEMTITSFYAVCFYLLMLVMVEGFGG
KEAVLRTLRDTPMMVHTGPCCCCCPCCPRLLLTRKKLQLLMLGPFQYAFLKITLTLVGLFLVPDGIYDPA
DISEGSTALWINTFLGVSTLLALWTLGIISRQARLHLGEQNMGAKFALFQVLLILTALQPSIFSVLANGG
QIACSPPYSSKTRSQVMNCHLLILETFLMTVLTRMYYRRKDHKVGYETFSSPDLDLNLKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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