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Report for CCDS33264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33264.1 Public Homo sapiens 2 SLC9A4 24 110 108 CCDS HistoryNCBI Gene:389015Re-query CCDS DB by CCDS ID:33264.1Re-query CCDS DB by GeneID:389015See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33264.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295269.5 ENSP00000295269.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295269.5Link to Ensembl Protein Viewer:ENSP00000295269.4Re-query CCDS DB by Nucleotide ID:ENST00000295269Re-query CCDS DB by Protein ID:ENSP00000295269
Original member Current member NCBI NM_001011552.4 NP_001011552.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001011552.4Link to Protein Sequence:NP_001011552.2Re-query CCDS DB by Nucleotide ID:NM_001011552Re-query CCDS DB by Protein ID:NP_001011552Link to BLAST:NP_001011552.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011552.2 798 Q6AI14 798 100% 0 0

Chromosomal Locations for CCDS 33264.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 102473760 102474015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102478839 102479302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102503448 102503707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102505254 102505471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102508079 102508281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102508847 102508933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102512203 102512273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102514090 102514251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102519859 102519955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102525024 102525155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102526259 102526346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102532330 102532688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGGCTCTGCAGATGTTCGTGACTTACAGTCCTTGGAATTGTTTGCTACTGCTAGTGGCTCTTGAGTGTT
CTGAAGCATCTTCTGATTTGAATGAATCTGCAAATTCCACTGCTCAGTATGCATCTAACGCTTGGTTTGC
TGCTGCCAGCTCAGAGCCAGAGGAAGGGATATCTGTTTTTGAACTGGATTATGACTATGTGCAAATTCCT
TATGAGGTCACTCTCTGGATACTTCTAGCATCCCTTGCAAAAATAGGCTTCCACCTCTACCACAGGCTGC
CAGGCCTCATGCCAGAAAGCTGCCTCCTCATCCTGGTGGGGGCGCTGGTGGGCGGCATCATCTTCGGCAC
CGACCACAAATCGCCTCCGGTCATGGACTCCAGCATCTACTTCCTGTATCTCCTGCCACCCATCGTTCTG
GAGGGCGGCTACTTCATGCCCACCCGGCCCTTCTTTGAGAACATCGGCTCCATCCTGTGGTGGGCAGTAT
TGGGGGCCCTGATCAACGCCTTGGGCATTGGCCTCTCCCTCTACCTCATCTGCCAGGTGAAGGCCTTTGG
CCTGGGCGACGTCAACCTGCTGCAGAACCTGCTGTTCGGCAGCCTGATCTCCGCCGTGGACCCAGTGGCC
GTGCTAGCCGTGTTTGAGGAAGCGCGCGTGAACGAGCAGCTCTACATGATGATCTTTGGGGAGGCCCTGC
TCAATGATGGCATTACTGTGGTCTTATACAATATGTTAATTGCCTTTACAAAGATGCATAAATTTGAAGA
CATAGAAACTGTCGACATTTTGGCTGGATGTGCCCGATTCATCGTTGTGGGGCTTGGAGGGGTATTGTTT
GGCATCGTTTTTGGATTTATTTCTGCATTTATCACACGTTTCACTCAGAATATCTCTGCAATTGAGCCAC
TCATCGTCTTCATGTTCAGCTATTTGTCTTACTTAGCTGCTGAAACCCTCTATCTCTCCGGCATCCTGGC
AATCACAGCCTGCGCAGTAACAATGAAAAAGTACGTGGAAGAAAACGTGTCCCAGACATCATACACGACC
ATCAAGTACTTCATGAAGATGCTGAGCAGCGTCAGCGAGACCTTGATCTTCATCTTCATGGGTGTGTCCA
CTGTGGGCAAGAATCACGAGTGGAACTGGGCCTTCATCTGCTTCACCCTGGCCTTCTGCCAAATCTGGAG
AGCCATCAGCGTATTTGCTCTCTTCTATATCAGTAACCAGTTTCGGACTTTCCCCTTCTCCATCAAGGAC
CAGTGCATCATTTTCTACAGTGGTGTTCGAGGAGCTGGAAGTTTTTCACTTGCATTTTTGCTTCCTCTGT
CTCTTTTTCCTAGGAAGAAAATGTTTGTCACTGCTACTCTAGTAGTTATATACTTTACTGTATTTATTCA
GGGAATCACAGTTGGCCCTCTGGTCAGGTACCTGGATGTTAAAAAAACCAATAAAAAAGAATCCATCAAT
GAAGAGCTTCATATTCGTCTGATGGATCACTTAAAGGCTGGAATCGAAGATGTGTGTGGGCACTGGAGTC
ACTACCAAGTGAGAGACAAGTTTAAGAAGTTTGATCATAGATACTTACGGAAAATCCTCATCAGAAAGAA
CCTACCCAAATCAAGCATTGTTTCTTTGTACAAGAAGCTGGAAATGAAGCAAGCCATCGAGATGGTGGAG
ACTGGGATACTGAGCTCTACAGCTTTCTCCATACCCCATCAGGCCCAGAGGATACAAGGAATCAAAAGAC
TTTCCCCTGAAGATGTGGAGTCCATAAGGGACATTCTGACATCCAACATGTACCAAGTTCGGCAAAGGAC
CCTGTCCTACAACAAATACAACCTCAAACCCCAAACAAGTGAGAAGCAGGCTAAAGAGATTCTGATCCGC
CGCCAGAACACCTTAAGGGAGAGCATGAGGAAAGGTCACAGCCTGCCCTGGGGAAAGCCGGCTGGCACCA
AGAATATCCGCTACCTCTCCTACCCCTACGGGAATCCTCAGTCTGCAGGAAGAGACACAAGGGCTGCTGG
GTTCTCAGATGATGACAGCAGTGATCCAGGATCCCCATCCATCACGTTCAGCGCATGCTCTCGGATAGGG
TCACTTCAGAAGCAAGAGGCACAAGAAATAATACCAATGAAGAGCCTACACAGAGGAAGGAAGGCATTCA
GCTTTGGTTATCAAAGAAACACAAGCCAAGAAGAGTACTTGGGTGGAGTAAGGAGGGTGGCCTTAAGACC
CAAACCTCTGTTTCATGCAGTGGATGAGGAGGGTGAGTCTGGAGGGGAGAGTGAGGGCAAGGCCTCTTTG
GTTGAGGTTCGGTCGAGGTGGACAGCTGACCATGGACACGGCAGGGACCATCACAGGTCCCATAGTCCTT
TGCTCCAAAAAAAATAG

Translation (798 aa):
MALQMFVTYSPWNCLLLLVALECSEASSDLNESANSTAQYASNAWFAAASSEPEEGISVFELDYDYVQIP
YEVTLWILLASLAKIGFHLYHRLPGLMPESCLLILVGALVGGIIFGTDHKSPPVMDSSIYFLYLLPPIVL
EGGYFMPTRPFFENIGSILWWAVLGALINALGIGLSLYLICQVKAFGLGDVNLLQNLLFGSLISAVDPVA
VLAVFEEARVNEQLYMMIFGEALLNDGITVVLYNMLIAFTKMHKFEDIETVDILAGCARFIVVGLGGVLF
GIVFGFISAFITRFTQNISAIEPLIVFMFSYLSYLAAETLYLSGILAITACAVTMKKYVEENVSQTSYTT
IKYFMKMLSSVSETLIFIFMGVSTVGKNHEWNWAFICFTLAFCQIWRAISVFALFYISNQFRTFPFSIKD
QCIIFYSGVRGAGSFSLAFLLPLSLFPRKKMFVTATLVVIYFTVFIQGITVGPLVRYLDVKKTNKKESIN
EELHIRLMDHLKAGIEDVCGHWSHYQVRDKFKKFDHRYLRKILIRKNLPKSSIVSLYKKLEMKQAIEMVE
TGILSSTAFSIPHQAQRIQGIKRLSPEDVESIRDILTSNMYQVRQRTLSYNKYNLKPQTSEKQAKEILIR
RQNTLRESMRKGHSLPWGKPAGTKNIRYLSYPYGNPQSAGRDTRAAGFSDDDSSDPGSPSITFSACSRIG
SLQKQEAQEIIPMKSLHRGRKAFSFGYQRNTSQEEYLGGVRRVALRPKPLFHAVDEEGESGGESEGKASL
VEVRSRWTADHGHGRDHHRSHSPLLQKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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