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Report for CCDS33660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33660.1 Public Homo sapiens 22 MCAT 24 110 108 CCDS HistoryNCBI Gene:27349Re-query CCDS DB by CCDS ID:33660.1Re-query CCDS DB by GeneID:27349See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33660.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290429.11 ENSP00000290429.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000290429.11Link to Ensembl Protein Viewer:ENSP00000290429.5Re-query CCDS DB by Nucleotide ID:ENST00000290429Re-query CCDS DB by Protein ID:ENSP00000290429
Original member Current member NCBI NM_173467.5 NP_775738.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173467.5Link to Protein Sequence:NP_775738.3Re-query CCDS DB by Nucleotide ID:NM_173467Re-query CCDS DB by Protein ID:NP_775738Link to BLAST:NP_775738.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775738.3 390 Q8IVS2-1 390 100% 0 0

Chromosomal Locations for CCDS 33660.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 43133043 43133486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43137081 43137298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43141162 43141249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43142926 43143348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGAGCGTCCGGGTCGCACGGGTAGCGTGGGTCAGGGGCTTGGGCGCCAGCTACCGCCGCGGCGCCTCGA
GC
TTCCCGGTGCCTCCGCCGGGCGCCCAGGGTGTAGCGGAGCTGCTGCGAGATGCGACCGGGGCGGAGGA
G
GAGGCGCCCTGGGCGGCGACGGAGCGGCGAATGCCGGGCCAGTGCTCCGTGCTGCTCTTCCCGGGCCAG
GGC
AGCCAGGTGGTGGGCATGGGCCGCGGTCTGCTCAACTACCCGCGCGTCCGCGAACTCTACGCCGCCG
CC
CGCCGCGTGCTGGGCTACGACCTGCTGGAACTGAGCCTGCACGGGCCGCAGGAGACCCTGGACCGCAC
C
GTGCACTGTCAGCCCGCGATCTTCGTGGCATCGCTGGCCGCTGTCGAGAAACTACATCACCTGCAGCCC
TCG
GTGATTGAGAACTGTGTTGCTGCTGCTGGATTCAGTGTGGGAGAGTTTGCAGCCCTAGTGTTTGCCG
GA
GCCATGGAATTTGCTGAAGGTTTGTATGCAGTGAAAATCCGAGCTGAGGCCATGCAGGAAGCTTCAGA
A
GCTGTCCCCAGTGGGATGCTGTCTGTCCTCGGCCAGCCTCAGTCCAAGTTCAACTTCGCCTGTTTGGAA
GCC
CGGGAACACTGCAAGTCTTTAGGCATAGAGAACCCCGTATGTGAAGTGTCCAACTACCTCTTTCCAG
AT
TGCAGGGTGATTTCAGGACACCAAGAGGCTCTACGGTTTCTCCAGAAGAATTCCTCTAAGTTTCATTT
C
AGACGCACCAGGATGTTGCCGGTTAGTGGCGCATTCCACACCCGCCTCATGGAGCCAGCCGTGGAGCCC
CTG
ACGCAAGCTTTAAAGGCAGTCGACATTAAGAAGCCTCTGGTTTCTGTCTACTCCAACGTCCACGCGC
AT
AGATACAGGCATCCCGGGCACATCCACAAGCTGCTGGCCCAGCAGCTGGTCTCCCCAGTGAAGTGGGA
G
CAGACGATGCATGCCATATACGAAAGGAAAAAGGGCAGGGGGTTCCCCCAAACTTTCGAAGTAGGCCCT
GGC
AGGCAGCTGGGAGCCATCCTGAAGAGCTGTAACATGCAGGCCTGGAAGTCCTACAGCGCCGTGGATG
TG
CTGCAGACCCTCGAACATGTGGACCTGGACCCTCAGGAGCCCCCGAGATGA


Translation (390 aa):
MSVRVARVAWVRGLGASYRRGASSFPVPPPGAQGVAELLRDATGAEEEAPWAATERRMPGQCSVLLFPGQ
G
SQVVGMGRGLLNYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHCQPAIFVASLAAVEKLHHLQP
S
VIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIRAEAMQEASEAVPSGMLSVLGQPQSKFNFACLE
A
REHCKSLGIENPVCEVSNYLFPDCRVISGHQE
ALRFLQKNSSKFHFRRTRMLPVSGAFHTRLMEPAVEP
L
TQALKAVDIKKPLVSVYSNVHAHRYRHPGHIHKLLAQQLVSPVKWEQTMHAIYERKKGRGFPQTFEVGP
G
RQLGAILKSCNMQAWKSYSAVDVLQTLEHVDLDPQEPPR




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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