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Report for CCDS33705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33705.1 Public Homo sapiens 3 SLC6A6 24 110 108 CCDS HistoryNCBI Gene:6533Re-query CCDS DB by CCDS ID:33705.1Re-query CCDS DB by GeneID:6533See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33705.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622186.5 ENSP00000480890.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000622186.5Link to Ensembl Protein Viewer:ENSP00000480890.1Re-query CCDS DB by Nucleotide ID:ENST00000622186Re-query CCDS DB by Protein ID:ENSP00000480890
Original member Current member NCBI NM_003043.6 NP_003034.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003043.6Link to Protein Sequence:NP_003034.2Re-query CCDS DB by Nucleotide ID:NM_003043Re-query CCDS DB by Protein ID:NP_003034Link to BLAST:NP_003034.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003034.2 620 P31641-1 620 100% 0 0

Chromosomal Locations for CCDS 33705.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14443635 14443863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14445717 14445851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14447582 14447816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14457950 14458082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14466516 14466650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14467853 14467956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14468088 14468212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14472205 14472317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14477205 14477342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14478466 14478568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14479085 14479185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14481671 14481841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14484867 14485007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGCCACCAAGGAGAAGCTGCAGTGTCTGAAAGATTTCCACAAGGACATCCTGAAGCCCTCACCAGGGA
AGAGCCCAGGCACGCGGCCTGAGGACGAGGCTGAGGGAAAACCTCCGCAGAGGGAGAAGTGGTCTAGCAA
GATCGACTTTGTGCTCTCTGTGGCTGGCGGCTTCGTGGGCTTGGGCAACGTCTGGCGCTTCCCGTACCTC
TGCTACAAGAATGGTGGAGGTGCGTTTCTCATACCGTATTTTATTTTCCTGTTTGGGAGCGGCCTGCCTG
TGTTTTTCTTGGAGATCATCATAGGCCAGTACACCTCTGAAGGGGGCATCACCTGCTGGGAAAAGATCTG
CCCCTTGTTCTCTGGTATCGGCTATGCCTCCGTTGTAATTGTGTCCCTCCTGAATGTCTACTACATCGTC
ATCCTGGCCTGGGCCACATACTACCTGTTCCAGTCCTTCCAGAAGGAGCTGCCCTGGGCACACTGCAACC
ACAGCTGGAACACACCTCACTGCATGGAGGACACCATGCGCAAGAACAAGAGTGTCTGGATCACCATCAG
CTCCACCAACTTCACCTCCCCTGTCATCGAGTTCTGGGAGCGCAACGTGCTGAGCTTGTCCCCTGGAATC
GACCACCCAGGCTCTCTGAAATGGGACCTCGCTCTCTGCCTTCTTTTAGTCTGGCTAGTGTGTTTCTTCT
GCATCTGGAAGGGCGTCAGGTCCACTGGGAAGGTCGTCTACTTCACAGCCACTTTTCCATTCGCCATGCT
CCTGGTGCTGCTGGTCCGAGGGCTGACGCTGCCGGGCGCGGGCGCAGGCATCAAGTTCTATCTGTATCCT
GACATCACCCGCCTTGAGGACCCACAGGTGTGGATTGACGCTGGGACTCAGATATTCTTCTCTTATGCCA
TCTGCCTGGGGGCTATGACCTCGCTGGGGAGCTACAACAAGTACAAGTATAACTCGTACAGGGACTGTAT
GCTGCTGGGATGCCTGAACAGTGGTACCAGTTTTGTGTCTGGCTTCGCAATTTTTTCCATCCTGGGCTTC
ATGGCACAAGAGCAAGGGGTGGACATTGCTGATGTGGCTGAGTCAGGTCCTGGCCTGGCCTTCATTGCCT
ACCCAAAAGCTGTGACAATGATGCCGCTGCCCACATTTTGGTCCATTCTTTTTTTTATTATGCTTCTCTT
GCTTGGACTGGATAGCCAGTTTGTTGAAGTTGAAGGACAGATCACATCCTTGGTTGATCTTTACCCATCC
TTCCTAAGGAAGGGTTATCGTCGGGAAATCTTCATCGCCTTCGTGTGTAGCATCAGCTACCTGCTGGGGC
TGACGATGGTGACGGAGGGTGGCATGTATGTGTTTCAGCTCTTTGACTACTATGCAGCTAGCGGTGTATG
CCTTTTGTGGGTTGCATTCTTTGAATGTTTTGTTATTGCCTGGATATATGGAGGTGATAACCTTTATGAT
GGTATTGAGGACATGATTGGCTATCGGCCCGGGCCCTGGATGAAGTACAGCTGGGCTGTGATCACTCCAG
TTCTCTGTGTTGGATGTTTCATCTTCTCGCTCGTCAAGTACGTACCCCTGACCTACAACAAAACATACGT
GTACCCCAACTGGGCCATTGGGCTGGGCTGGAGCCTGGCCCTTTCCTCCATGCTCTGCGTTCCCTTGGTC
ATCGTCATCCGCCTCTGCCAGACTGAGGGGCCGTTCCTTGTGAGAGTCAAGTACCTGCTGACCCCAAGGG
AACCCAACCGCTGGGCTGTGGAGCGCGAGGGAGCCACACCTTACAACTCTCGCACCGTCATGAACGGCGC
TCTCGTGAAACCGACCCACATCATTGTGGAGACCATGATGTGA

Translation (620 aa):
MATKEKLQCLKDFHKDILKPSPGKSPGTRPEDEAEGKPPQREKWSSKIDFVLSVAGGFVGLGNVWRFPYL
CYKNGGGAFLIPYFIFLFGSGLPVFFLEIIIGQYTSEGGITCWEKICPLFSGIGYASVVIVSLLNVYYIV
ILAWATYYLFQSFQKELPWAHCNHSWNTPHCMEDTMRKNKSVWITISSTNFTSPVIEFWERNVLSLSPGI
DHPGSLKWDLALCLLLVWLVCFFCIWKGVRSTGKVVYFTATFPFAMLLVLLVRGLTLPGAGAGIKFYLYP
DITRLEDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNSYRDCMLLGCLNSGTSFVSGFAIFSILGF
MAQEQGVDIADVAESGPGLAFIAYPKAVTMMPLPTFWSILFFIMLLLLGLDSQFVEVEGQITSLVDLYPS
FLRKGYRREIFIAFVCSISYLLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECFVIAWIYGGDNLYD
GIEDMIGYRPGPWMKYSWAVITPVLCVGCFIFSLVKYVPLTYNKTYVYPNWAIGLGWSLALSSMLCVPLV
IVIRLCQTEGPFLVRVKYLLTPREPNRWAVEREGATPYNSRTVMNGALVKPTHIIVETMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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