NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33990.1 Public Homo sapiens 4 TECRL 24 110 108 CCDS HistoryNCBI Gene:253017Re-query CCDS DB by CCDS ID:33990.1Re-query CCDS DB by GeneID:253017See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381210.8 ENSP00000370607.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381210.8Link to Ensembl Protein Viewer:ENSP00000370607.3Re-query CCDS DB by Nucleotide ID:ENST00000381210Re-query CCDS DB by Protein ID:ENSP00000370607
Original member Current member NCBI NM_001010874.5 NP_001010874.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010874.5Link to Protein Sequence:NP_001010874.2Re-query CCDS DB by Nucleotide ID:NM_001010874Re-query CCDS DB by Protein ID:NP_001010874Link to BLAST:NP_001010874.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010874.2 363 Q5HYJ1 363 100% 0 0

Chromosomal Locations for CCDS 33990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 64280072 64280199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64281041 64281086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64281474 64281559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64289710 64289767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64299974 64300017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64305166 64305238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64309826 64309931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64314648 64314763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64322689 64322792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64328512 64328556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64375172 64375223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64409118 64409351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGTTCAAAAGGCACAAGTCCCTCGCTTCGGAACGCAAGAGAGCATTACTTTCCCAAAGAGCTACACGGT
TCATACTGAAGGATGATATGAGAAATTTTCACTTTTTGTCAAAACTTGTACTCTCAGCGGGCCCTCTAAG
ACCAACTCCAGCAGTCAAACATTCAAAAACGACTCACTTTGAGATTGAAATATTTGATGCTCAAACAAGG
AAACAGATATGTATTCTGGATAAGGTGACACAATCATCTACTATTCATGATGTTAAGCAAAAGTTTCACA
AAGCATGTCCAAAGTGGTACCCTTCTCGAGTTGGTCTGCAGCTAGAATGTGGCGGGCCTTTTTTGAAGGA
CTACATTACCATTCAAAGTATTGCAGCTTCCTCCATTGTCACACTGTATGCTACAGACCTAGGTCAACAA
GTCAGTTGGACCACAGTGTTTTTGGCTGAATACACAGGACCTCTGCTAATATACCTCCTCTTTTATTTGA
GGATCCCATGTATATATGATGGAAAAGAGAGTGCTAGAAGATTACGCCACCCAGTGGTACACTTGGCTTG
CTTCTGTCATTGTATACACTACATCCGATACCTTTTGGAAACCTTATTTGTTCACAAAGTTTCTGCAGGA
CACACACCTTTGAAAAATTTGATAATGAGTTGTGCCTTTTACTGGGGATTTACTTCTTGGATTGCCTACT
ACATTAATCATCCACTATATACACCACCATCATTTGGAAACAGGCAAATCACAGTATCTGCTATCAATTT
TCTGATTTGTGAAGCTGGGAATCATTTCATCAATGTAATGTTGTCTCATCCCAATCACACAGGAAACAAT
GCCTGTTTCCCAAGTCCAAATTATAACCCCTTCACATGGATGTTTTTCCTGGTTTCATGTCCTAACTACA
CCTATGAGATTGGATCATGGATTAGTTTCACAGTCATGACACAAACACTGCCAGTTGGAATTTTTACACT
TCTGATGAGTATCCAGATGTCTTTGTGGGCACAAAAGAAACATAAGATTTATCTGAGAAAATTCAATTCA
TATATTCATAGAAAATCAGCAATGATTCCATTCATATTGTAA

Translation (363 aa):
MFKRHKSLASERKRALLSQRATRFILKDDMRNFHFLSKLVLSAGPLRPTPAVKHSKTTHFEIEIFDAQTR
KQICILDKVTQSSTIHDVKQKFHKACPKWYPSRVGLQLECGGPFLKDYITIQSIAASSIVTLYATDLGQQ
VSWTTVFLAEYTGPLLIYLLFYLRIPCIYDGKESARRLRHPVVHLACFCHCIHYIRYLLETLFVHKVSAG
HTPLKNLIMSCAFYWGFTSWIAYYINHPLYTPPSFGNRQITVSAINFLICEAGNHFINVMLSHPNHTGNN
ACFPSPNYNPFTWMFFLVSCPNYTYEIGSWISFTVMTQTLPVGIFTLLMSIQMSLWAQKKHKIYLRKFNS
YIHRKSAMIPFIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH