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Report for CCDS34338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34338.1 Public Homo sapiens 6 GCNT2 24 110 108 CCDS HistoryNCBI Gene:2651Re-query CCDS DB by CCDS ID:34338.1Re-query CCDS DB by GeneID:2651See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379597.7 ENSP00000368917.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379597.7Link to Ensembl Protein Viewer:ENSP00000368917.3Re-query CCDS DB by Nucleotide ID:ENST00000379597Re-query CCDS DB by Protein ID:ENSP00000368917
Original member Current member EBI ENST00000495262.7 ENSP00000419411.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000495262.7Link to Ensembl Protein Viewer:ENSP00000419411.2Re-query CCDS DB by Nucleotide ID:ENST00000495262Re-query CCDS DB by Protein ID:ENSP00000419411
Original member Current member NCBI NM_001374747.1 NP_001361676.1 Accepted alive Link to Nucleotide Sequence:NM_001374747.1Link to Protein Sequence:NP_001361676.1Re-query CCDS DB by Nucleotide ID:NM_001374747Re-query CCDS DB by Protein ID:NP_001361676Link to BLAST:NP_001361676.1
Original member Current member NCBI NM_145649.5 NP_663624.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145649.5Link to Protein Sequence:NP_663624.1Re-query CCDS DB by Nucleotide ID:NM_145649Re-query CCDS DB by Protein ID:NP_663624Link to BLAST:NP_663624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361676.1 402 Q8N0V5-1 402 100% 0 0
NP_663624.1 402 Q8N0V5-1 402 100% 0 0

Chromosomal Locations for CCDS 34338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 10528912 10529836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10621351 10621443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10626417 10626607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGATGGGCTCTTGGAAGCACTGTCTTTTTAGCGCGTCTCTTATCTCTGCCCTGATTTTTGTATTTGTTT
ACAATACTGAGTTATGGGAGAATAAACGTTTTCTGAGGGCAGCTCTGTCCAATGCTTCACTGTTAGCAGA
AGCCTGTCATCAGATTTTTGAGGGGAAAGTTTTTTACCCAACAGAAAATGCATTGAAAACTACCCTTGAT
GAAGCTACCTGCTATGAGTACATGGTTCGAAGCCACTATGTAACAGAAACACTCTCTGAAGAAGAGGCTG
GGTTCCCTTTAGCTTACACAGTGACCATCCACAAAGACTTCGGCACTTTTGAGAGGCTCTTCAGGGCGAT
TTATATGCCCCAAAATGTCTACTGTGTGCACCTGGATCAGAAGGCGACGGATGCCTTTAAAGGTGCAGTG
AAACAGTTACTCAGCTGCTTCCCAAATGCTTTTCTGGCTTCCAAGAAGGAGTCGGTTGTCTATGGGGGGA
TCTCCAGGCTCCAGGCTGACCTGAACTGCCTGGAAGACCTTGTGGCCTCTGAAGTTCCCTGGAAGTATGT
CATCAACACCTGCGGGCAAGACTTTCCCCTGAAAACCAACAGGGAAATAGTTCAGTATCTGAAGGGATTT
AAAGGGAAAAATATCACCCCCGGAGTGCTGCCTCCTGACCACGCTGTTGGACGGACTAAATACGTCCACC
AAGAACTGTTAAACCACAAAAATTCCTACGTGATTAAAACAACAAAATTAAAAACTCCTCCTCCTCATGA
CATGGTGATTTACTTTGGCACGGCCTACGTGGCTCTCACAAGGGACTTTGCTAACTTCGTCCTCCAAGAC
CAGCTCGCACTTGACTTACTCTCCTGGTCCAAGGACACCTACAGCCCCGACGAACATTTCTGGGTGACAC
TCAACAGGATTCCCGGTGTTCCTGGCTCTATGCCAAATGCATCCTGGACTGGAAACCTCAGAGCTATAAA
GTGGAGTGACATGGAAGACAGACACGGAGGCTGCCACGGCCACTATGTACATGGTATTTGTATCTATGGA
AACGGAGACTTAAAGTGGCTGGTTAATTCACCAAGCCTGTTTGCTAACAAGTTTGAGCTTAATACCTACC
CCCTTACTGTGGAATGCCTAGAACTGAGGCATCGCGAAAGAACCCTCAATCAGAGTGAAACTGCGATACA
ACCCAGCTGGTATTTTTGA

Translation (402 aa):
MMGSWKHCLFSASLISALIFVFVYNTELWENKRFLRAALSNASLLAEACHQIFEGKVFYPTENALKTTLD
EATCYEYMVRSHYVTETLSEEEAGFPLAYTVTIHKDFGTFERLFRAIYMPQNVYCVHLDQKATDAFKGAV
KQLLSCFPNAFLASKKESVVYGGISRLQADLNCLEDLVASEVPWKYVINTCGQDFPLKTNREIVQYLKGF
KGKNITPGVLPPDHAVGRTKYVHQELLNHKNSYVIKTTKLKTPPPHDMVIYFGTAYVALTRDFANFVLQD
QLALDLLSWSKDTYSPDEHFWVTLNRIPGVPGSMPNASWTGNLRAIKWSDMEDRHGGCHGHYVHGICIYG
NGDLKWLVNSPSLFANKFELNTYPLTVECLELRHRERTLNQSETAIQPSWYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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