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Report for CCDS34779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34779.1 Public Homo sapiens 7 CHPF2 24 110 108 CCDS HistoryNCBI Gene:54480Re-query CCDS DB by CCDS ID:34779.1Re-query CCDS DB by GeneID:54480See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34779.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000035307.7 ENSP00000035307.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000035307.7Link to Ensembl Protein Viewer:ENSP00000035307.2Re-query CCDS DB by Nucleotide ID:ENST00000035307Re-query CCDS DB by Protein ID:ENSP00000035307
Original member Current member NCBI NM_019015.3 NP_061888.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019015.3Link to Protein Sequence:NP_061888.1Re-query CCDS DB by Nucleotide ID:NM_019015Re-query CCDS DB by Protein ID:NP_061888Link to BLAST:NP_061888.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061888.1 772 Q9P2E5-1 772 100% 0 0

Chromosomal Locations for CCDS 34779.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151234012 151234274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151235048 151235612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151236408 151236590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151237374 151238681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGCGACTGAGCTCCCTGTTGGCTCTGCTGCGGCCAGCGCTTCCCCTCATCTTAGGGCTGTCTCTGGGGT
GCAGCCTGAGCCTCCTGCGGGTTTCCTGGATCCAGGGGGAGGGAGAAGATCCCTGTGTCGAGGCTGTAGG
GGAGCGAGGAGGGCCACAGAATCCAGATTCCAGAGCTCGGCTAGACCAAAGTGATGAAGACTTCAAACCC
CGGATTGTCCCCTACTACAGGGACCCCAACAAGCCCTACAAGAAGGTGCTCAGGACTCGGTACATCCAGA
CAGAGCTGGGCTCCCGTGAGCGGTTGCTGGTGGCTGTCCTGACCTCCCGAGCTACACTGTCCACTTTGGC
CGTGGCTGTGAACCGTACGGTGGCCCATCACTTCCCTCGGTTACTCTACTTCACTGGGCAGCGGGGGGCC
CGGGCTCCAGCAGGGATGCAGGTGGTGTCTCATGGGGATGAGCGGCCCGCCTGGCTCATGTCAGAGACCC
TGCGCCACCTTCACACACACTTTGGGGCCGACTACGACTGGTTCTTCATCATGCAGGATGACACATATGT
GCAGGCCCCCCGCCTGGCAGCCCTTGCTGGCCACCTCAGCATCAACCAAGACCTGTACTTAGGCCGGGCA
GAGGAGTTCATTGGCGCAGGCGAGCAGGCCCGGTACTGTCATGGGGGCTTTGGCTACCTGTTGTCACGGA
GTCTCCTGCTTCGTCTGCGGCCACATCTGGATGGCTGCCGAGGAGACATTCTCAGTGCCCGTCCTGACGA
GTGGCTTGGACGCTGCCTCATTGACTCTCTGGGCGTCGGCTGTGTCTCACAGCACCAGGGGCAGCAGTAT
CGCTCATTTGAACTGGCCAAAAATAGGGACCCTGAGAAGGAAGGGAGCTCGGCTTTCCTGAGTGCCTTCG
CCGTGCACCCTGTCTCCGAAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCTCTGGAGTTGGA
GCGGGCTTACAGTGAAATAGAACAACTGCAGGCTCAGATCCGGAACCTGACCGTGCTGACCCCCGAAGGG
GAGGCAGGGCTGAGCTGGCCCGTTGGGCTCCCTGCTCCTTTCACACCACACTCTCGCTTTGAGGTGCTGG
GCTGGGACTACTTCACAGAGCAGCACACCTTCTCCTGTGCAGATGGGGCTCCCAAGTGCCCACTACAGGG
GGCTAGCAGGGCGGACGTGGGTGATGCGTTGGAGACTGCCCTGGAGCAGCTCAATCGGCGCTATCAGCCC
CGCCTGCGCTTCCAGAAGCAGCGACTGCTCAACGGCTATCGGCGCTTCGACCCAGCACGGGGCATGGAGT
ACACCCTGGACCTGCTGTTGGAATGTGTGACACAGCGTGGGCACCGGCGGGCCCTGGCTCGCAGGGTCAG
CCTGCTGCGGCCACTGAGCCGGGTGGAAATCCTACCTATGCCCTATGTCACTGAGGCCACCCGAGTGCAG
CTGGTGCTGCCACTCCTGGTGGCTGAAGCTGCTGCAGCCCCGGCTTTCCTCGAGGCCTTTGCAGCCAATG
TCCTGGAGCCACGAGAACATGCATTGCTCACCCTGTTGCTGGTCTACGGGCCACGAGAAGGTGGCCGTGG
AGCTCCAGACCCATTTCTTGGGGTGAAGGCTGCAGCAGCGGAGTTAGAGCGACGGTACCCTGGGACGAGG
CTGGCCTGGCTCGCTGTGCGAGCAGAGGCCCCTTCCCAGGTGCGACTCATGGACGTGGTCTCGAAGAAGC
ACCCTGTGGACACTCTCTTCTTCCTTACCACCGTGTGGACAAGGCCTGGGCCCGAAGTCCTCAACCGCTG
TCGCATGAATGCCATCTCTGGCTGGCAGGCCTTCTTTCCAGTCCATTTCCAGGAGTTCAATCCTGCCCTG
TCACCACAGAGATCACCCCCAGGGCCCCCGGGGGCTGGCCCTGACCCCCCCTCCCCTCCTGGTGCTGACC
CCTCCCGGGGGGCTCCTATAGGGGGGAGATTTGACCGGCAGGCTTCTGCGGAGGGCTGCTTCTACAACGC
TGACTACCTGGCGGCCCGAGCCCGGCTGGCAGGTGAACTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAG
GGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGGGCCGTAGAGCCAGGGC
TGGTGCAGAAGTTCTCCCTGCGAGACTGCAGCCCACGGCTCAGTGAAGAACTCTACCACCGCTGCCGCCT
CAGCAACCTGGAGGGGCTAGGGGGCCGTGCCCAGCTGGCTATGGCTCTCTTTGAGCAGGAGCAGGCCAAT
AGCACTTAG

Translation (772 aa):
MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGERGGPQNPDSRARLDQSDEDFKP
RIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGA
RAPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRA
EEFIGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGVGCVSQHQGQQY
RSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEG
EAGLSWPVGLPAPFTPHSRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGDALETALEQLNRRYQP
RLRFQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRALARRVSLLRPLSRVEILPMPYVTEATRVQ
LVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTR
LAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPAL
SPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALE
GLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQEQAN
ST


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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