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Report for CCDS35540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35540.1 Public Mus musculus 1 Inpp4a 23 108 98 CCDS HistoryNCBI Gene:269180Re-query CCDS DB by CCDS ID:35540.1Re-query CCDS DB by GeneID:269180See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114933.8 ENSMUSP00000110583.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114933.8Link to Ensembl Protein Viewer:ENSMUSP00000110583.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114933Re-query CCDS DB by Protein ID:ENSMUSP00000110583
Original member Current member NCBI NM_172971.3 NP_766559.2 Accepted alive Link to Nucleotide Sequence:NM_172971.3Link to Protein Sequence:NP_766559.2Re-query CCDS DB by Nucleotide ID:NM_172971Re-query CCDS DB by Protein ID:NP_766559Link to BLAST:NP_766559.2

Chromosomal Locations for CCDS 35540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37369335 37369488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37371702 37371806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37372311 37372419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37374272 37374289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37377578 37377761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37378841 37379059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37379922 37380060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37383339 37383371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37387698 37387870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37388787 37388910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37389650 37389776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37390049 37390189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37392943 37393040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37396070 37396182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37398766 37398920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37403449 37403629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGTGTGTGTGTTTTGCTTGCAGGGTATGTGAGTTGGAAGAGTTGGGGGAGCTGTCCCCTTGCTGGGAGA
GCCTCCGGCGCCAGATTGTCACCCAGTATCAGACTATCATCCTCACCTACCAGGAGAATCTGACTGACCT
CCATCAGTACAAAGGTCCTTCCTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAAGTTAGAATTTGTTCCC
ACAAACCTGCACATACAACGGATGCGAGTTCAAGATGATGGAGGCTCAGATCAGAACTACGATGTCGTCA
CTATTGGAGCCCCAGCAGCACACTGCCAAGGTTTTAAGTCAGGAGGTCTTCGAAAAAAGCTGCACAAGTT
TGAAGAGGCCAAGAAACACAGTTTTGAGGAGTGTTGTACATCTTCTAGTGGCCAGTCCATCATCTACATA
CCACAGGACATCACCCGAGCCAAGGAGATCATTGCCCAGATCAACACCCTAAAAACCCAGGTCAGCTACT
ACGCGGAACGGCTCTCAAGGGCTGCGAAGGACAGGTCAGCTACTGGCCTTGAGAGGACTCTCGCCATCTT
GGCAGACAAGACTCGGCAGTTGGTGACTGTCTGTGACTGTAAGCTGCTGGCCAACTCCATCCATGGGCTG
AATGCAGCTCGGCCCGACTACATCGCTTCCAAGGCCTCCCCTACCTCGACTGAGGAGGAGCAGGTGATGC
TTCGGAATGACCAGGACACCCTGATGGCCAGGTGGGCGGGGAGAAGCAGCCGGTCTTCCCTGCAGGTGGA
CTGGCATGAGGAGGAGTGGGAGAAAGTGTGGCTGAATGTGGACAAGAGCCTGGAGTGCATCATTCAGCGG
GTGGACAAGCTGCTGCAGAAGGAGCGTCTGCATGGGGAGGGCTGCGAGGATGCTTTCCCCTGTTCGAGCA
CCTGCTCCAGCAAGAAAGATTGCAGCCCCCCTCCTGAAGAGTCCAGTCCAGGTGAGTGGAGCGAGGCCCT
TTACCCTCTGCTGACCACCCTCACAGACTGTGTGGCCATGATGAGCGACAAGGCCAAGGCAGCCATGGTC
TTCCTGCTCATGCAGGACAGTGCCCCCACCATTGCCTCGTACCTCAGCCTGCAGTATCGCCGTGACGTCG
TCTTCTGCCAAACCCTGACAGCCCTCATCTGTGGCTTTATCATCAAGCTGAGGAACTGCCTGCACGACGG
TGGCTTCCTGCGGCAGCTCTACACCATCGGCCTTCTGGCCCAGTTTGAGAGCCTGCTGAGCACCTACGGA
GAGGAGTTGGCCATGTTGGAGGACATGAGCCTTGGAATCATGGACCTGAGGAATGTGACCTTTAAAGTCA
CTCAGGCCACTTCGAATGCATCAAATGACATGCTGCCGGTCATCACAGGAAACCGGGATGGCTTTAACGT
GCGGATCCCTCTGCCAGGCCCACTGTTTGACTCCCTCCCCAGAGAGATCCAGAGTGGCATGCTGCTGCGG
GTGCAGCCTGTCCTCTTCAACGTGGGCATCAATGAGCAACAGACACTGGCTGAGAGGTTTGGAGATACGT
CCTTACAAGAAGTTATCAATGTGGAGAGCTTGGTGCGGTTAAATTCCTACTTTGAGCAGTTTAAGGAGGT
TTTGCCGGAGGACTGTCTACCTCGATCTCGGAGTCAGACCTGCCTTCCAGAGCTGCTGCGGTTCCTGGGA
CAGAATGTCCATGCACGCAAGAATAAGAATGTGGACATCCTCTGGCAAGCTGCTGAGGTCTGTCGCCGCC
TTAACGGGGTCCGATTCACCAGCTGCAAGAGTGCCAAGGACCGCACAGCCATGTCGGTGACCCTGGAGCA
GTGTCTGATCCTGCAGCACGAGCACGGCATGGCCCCGCAGGTCTTCACACAAGCCCTGGAGTGCATGCGC
AGCATTGGAACACGGGAGGTAGTCACCCAGAAGAACTTGAGCGGCCTGGTGCCCATCCGAGACTTAAGGC
TAGACCCCAGCCTTCTCTGTTCCATTCCTTTATTAGCTCTAAGCCCCAATCTACTGATTGTGTGGCTCTT
TCTGAGCATAGCGTACCTGGTGACCAAATTGCGTTGCAAATAG

Translation (690 aa):
MCVCFACRVCELEELGELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSLKADKKLEFVP
TNLHIQRMRVQDDGGSDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEAKKHSFEECCTSSSGQSIIYI
PQDITRAKEIIAQINTLKTQVSYYAERLSRAAKDRSATGLERTLAILADKTRQLVTVCDCKLLANSIHGL
NAARPDYIASKASPTSTEEEQVMLRNDQDTLMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQR
VDKLLQKERLHGEGCEDAFPCSSTCSSKKDCSPPPEESSPGEWSEALYPLLTTLTDCVAMMSDKAKAAMV
FLLMQDSAPTIASYLSLQYRRDVVFCQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYG
EELAMLEDMSLGIMDLRNVTFKVTQATSNASNDMLPVITGNRDGFNVRIPLPGPLFDSLPREIQSGMLLR
VQPVLFNVGINEQQTLAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPEDCLPRSRSQTCLPELLRFLG
QNVHARKNKNVDILWQAAEVCRRLNGVRFTSCKSAKDRTAMSVTLEQCLILQHEHGMAPQVFTQALECMR
SIGTREVVTQKNLSGLVPIRDLRLDPSLLCSIPLLALSPNLLIVWLFLSIAYLVTKLRCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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