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Report for CCDS35698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35698.1 Public Mus musculus 1 Lct 23 108 98 CCDS HistoryNCBI Gene:226413Re-query CCDS DB by CCDS ID:35698.1Re-query CCDS DB by GeneID:226413See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 35698.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073490.6 ENSMUSP00000073190.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073490.6Link to Ensembl Protein Viewer:ENSMUSP00000073190.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073490Re-query CCDS DB by Protein ID:ENSMUSP00000073190
Original member Current member NCBI NM_001081078.2 NP_001074547.1 Accepted alive Link to Nucleotide Sequence:NM_001081078.2Link to Protein Sequence:NP_001074547.1Re-query CCDS DB by Nucleotide ID:NM_001081078Re-query CCDS DB by Protein ID:NP_001074547Link to BLAST:NP_001074547.1

Chromosomal Locations for CCDS 35698.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 128285119 128285336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128286456 128286686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128287491 128287714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128288951 128289085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128291923 128292032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128293627 128293829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128294126 128294324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128295073 128295363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128298466 128298734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128299839 128301395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128303752 128304397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128307556 128308276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128310517 128310595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128311535 128311637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128313055 128313138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128319059 128319138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128327658 128328303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5796 nt):
ATGGAGCTGCCTTGGACAGCACTCTTCCTCAGTACCTTCCTCCTGGGTCTTTCATGCCAGGGGAATGACT
GGGAATCTGACAGAAATTTTATTTCAGCTGCTGGTCCTCTAACAAATGACTTAGTGCACAATCTGAACCA
TCCGCTGGGAAAGCAGGGCTCTGATTTGGTAGCTGGTGATACTGACATCTATGTCTGCCAGCAGCCACTG
CCCTCCTTCTTGCCTCAGTACTTCAGCAGTCTTCGGGCCAGCCAGGTTACCCATTACAAAGTACTTCTGT
CATGGGCACAACTTCTCCCAAAAGGAAGCTCCAAGAATCCAGACCAGGAAGCAGTGCAGTGCTACCGACA
ACTCCTCCAGTCCCTGAAGGATGCCCAGCTTCAGCCCATGGTGGTCCTGTTCCACCAGATGCCACCTACC
AGCACCATCCAGAGAGACGGGGGCTTTGCTGACCTCTTTGCTGATTATGCCACATTGGCTTTTCAGTCCT
TTGGGGACCTTGTTGAGATCTGGTTCACCTTCAGTGACTTGGAGAAAGTGATCATGGGTCTTCCCCACCA
GCATTTGAAAGCTTCTGGTCTCCAAACCCTCAGCGATGCCCACAGGAAAGCCTTTGACGTTTACCACAGA
AAGTACTCTTCTCAGGGAGGAAAGCTGTCTGTGGTCCTGAAGGCTGAAGACCTCCCCAAGCTTCTGCCAG
ACCCATCCTCAGCGGCTCTCGTCAAGGGCTCCGTGGATTTCCTCTCTCTTGATTTGTCTTATGACTGCCA
AAGTATATCGACTCTACCACAGAAGCTGAGTGAATTGCAGAACCTTGAGCCCAAAGTGAAAGTTTTCGTC
TACACCCTAAAACCTCAGGACTGCCCATCGACTGGAATGAGCCCCGCCTCACTGCTCTTCAGACTCCTGG
AAGCCATAAATAAAGACCAAGTCCAGACTGTTGGGTTTGATGTCAGTGCCTTCCTGAGCTGTACGTCCAG
TTCTGAGGAGAGCCCATCTTGTTCTTTAACCTACAGTAGCCTGGCCCTTCAGAGCGAGCAGCAGCATGAG
ACAGTTGTGTCCTCATTCCCTGGGTCGGCCTACCAGAGAGTCTGGGCAGCCTTGGCTAACCAGTCTAGGG
AGGAAAGGGACGCTTTCCTGCAAGATGTATTTCCAGAAGGGTTCCTCTGGGGCGTATCCACGGGAGCCTT
TAACGTGGAAGGAGGCTGGGCCGAAGGTGGCAGAGGGCCAAGCATCTGGGACCACTACAGTAACCTGAAT
GCTGCGGAGAGCCAAGCGACAGCAAAGGTGGCCAGTGACAGTTACCACAAACCAGTTTCTGATGTGGCCC
TCCTCCGAGGCCTCAGGGCTGACGTGTACAAATTCTCCATCTCCTGGTCCCGCATCTTCCCTTTCGGGCA
GAGGACCAGCCCCAACCTCCAAGGTGTTGCCTACTACAACAAACTGATTGACAGCCTGCTGGACTCCCAG
GTGGAGCCCATGGCTACGCTGTTCCACTGGGACCTCCCCCAGGCCCTGCAGGAGCAAGGCGGGTGGCAGA
ACGAGAGTGTGGTGGATGCCTTCCTGGACTACGCCGCCTTCTGCTTCTCCACCTTTGGGGACCGTGTGAA
GCTGTGGGTGACCTTCCATGAGCCCTGGGTGATAAGCTATGCAGGCTACGGCACCGGGCAGCATGCGCCA
GCCATCTCTGACCCAGGAGTGGCTTCCTTTAAGGTGGCTCACCTGATCCTCAAGGCGCATGCCAGAACTT
GGCATCACTACAACTATCACCATCGCCAAAAGCAGCAGGGACGCGTGGGCATTGTGCTCAATTCAGACTG
GGCGGAGCCCCTGGACGGGAAGAGCCCGCAGGACCTTGCTGCTGCCGAGCGCTACCTGCACTTCATGCTA
GGCTGGTTTGCACACCCCATCTTCATAGATGGGGACTACCCTGCTGCCCTTCGGGCCCAGATCCAGCACA
CAAACCAGCAGTGTGGCCGTCCTCTGGCCCAACTCCCAGAGTTCACTGAAGCAGAGAAGCGGCTCCTGAA
AGGCTCTGCGGATTTCCTAGGTCTGTCTCATTACACATCCCGCCTCATCAGCAAGGCCGGGCAGCAGACC
TGCATCCCCAGCTATGATAACATCGGAGGCTTCTCCCAGCACGTAGATCCCAAGTGGCCCCAGACCGCAT
CGCCCTGGATCCGAGTGGTGCCCTGGGGCATAAGGAGGCTGCTTCGGTTCGCTTCCCTGGAATACACGAA
AGGAAAACTTCCAATCTTCTTGGCTGGAAATGGCATGCCAATAGGGGAAGGGTCGGATCTGTTTGATGAC
TCAATGAGAGTAAACTACTTAAACTTGTACATCAACGAGGTGCTCAAGGCTGTCAAAGAGGATTCAGTGG
ATGTCCGTTCATACATTGCTCGTTCCCTCATTGATGGCTATGAAGGACCCCTGGGCTATAGCCAGAGGTT
TGGGCTATACCATGTCAACTTCAATGACAGCAGCAGGCCACGAACTCCCAGGAAATCTGCCTACTTCTTC
ACCAGCATCATTGAAAAGAACGGTTTTCCTGCCAAGAAAGTCAAAAGAAACCCACTACCCTTGAAAGCAG
ACTTCAGCTCCAGAGCCAGGGCTGCCTTCAGCTTTCCATCGGAGGTGCCCTCCAAGGCTAAAGTAGTGTG
GGAGAAGTTCTCCAGGCAGCCCAAGTTTGAAAGAGACTTATTCTATCATGGCACATTCCGGGATGACTTC
CTGTGGGGCGTATCCTCTTCAGCCTATCAAATCGAAGGAGGTTGGGATGCTGATGGCAAAGGCCCCAGCA
TCTGGGATAACTTCACGCACACCCCAGGGAACGGTGTGAAAGACAATGCCACGGGAGACATAGCGTGTGA
CAGCTATCATCAACTGGACGCTGACATAAACATCCTTCGAACTCTGAAGGTCAAGTCCTATCGATTTTCC
ATCTCCTGGCCTCGAATTTTCCCAACGGGAAGAAACAGTTCCATCAACAAACAAGGTGTTGATTATTACA
ACAAACTGATTGACAGATTGTTGGAGAGCAACATCTTCCCCATGGTGACACTCTTTCACTGGGACCTGCC
CCAGGCCCTCCAGGATATTGGAGGTTGGGAGAACCCTTCTTTGATTGAGTTGTTCGATAGCTATGCGGAC
TTCTGTTTTAAGACCTTTGGTGACAGAGTCAAGTTCTGGATGACCTTTAATGAGCCTTGGTGTTCTGCAG
TGTTAGGCTACAGTTCAGGGATATTCCCCCCAAATGTGCAGGACCCGGGCTCACTATCTTACAAGGTTAG
CCATGTAATCATTAAGGCACACGCCAGAGTCTACCATACTTATGATGAGAAGTACAGGCAGGAGCAGAAG
GGGGTCATCTCTCTGAGCCTCAACACTCACTGGGTCGAACCCAAGGACCCGGGGGTCCAAAGGGACGTGG
AAGCCGCTGACCGGATGCTGCAGTTTAACCTGGGCTGGTTTGCCCACCCTATTTTTAAAAACGGGGACTA
TCCAGATGTCATGAAATGGAATGTGGGGAACAGGAGTGAGCTGCAGCACCTGGCCAGCTCCCGCCTGCCC
AGCTTCACAGAAGAGGAGAAGAATTACATCAGAGGCACCGCCGATGTCTTCTGCATCAACACCTACACCT
CTGTATTTGCACAGCATGTCACTCCTAGACTGAACCCACCCAGCTATGATAATGACATGGAGTTAAAGGC
CAGTGACATGAACTCTTCAGCCTTGATCTCCATGATGCACCAAGACGTGCCCTGGGGGATGAGGAGGTTG
CTGAACTGGATCAAGGAGGAGTATGGCAACATTCCCATTTACATCACTGAGAATGGACAGGGGCTGACAA
ACCCCACGCTGGATGACACGGAAAGGATATTCTACCACAAAACCTATATTAATGAGGCTCTGAAAGCCTA
CAGGCTGGATGGTGTTGACCTTCGAGGCTACTCTGCCTGGGCGCTGATGGACAACTTCGAGTGGCTGCAC
GGCTACACCATGAGATTTGGATTGTATCACGTCGACTTTGATCATGTGAACAGACCTCGAACAGCAAGAG
CCTCAGCCAGATACTATACAGAGGTCATTACCAACAATGGCATGCCCCTAGCCAAGGAGGATGAGTTCCT
GTATGGAGAGTTTCCCAAGGGCTTCATCTGGAGTGCAGCGTCTGCTTCCTATCAGGTTGAAGGTGCGTGG
AGAGCAGATGGCAAAGGACTTAGTATCTGGGACACATTTTCCCACACTCCACTGAAGATTGGGAATGACG
ACAACGGGGACGTGGCATGTGACAGTTACCACAAGATTGCTGAGGATGTGGTGGCCCTTCAGAACCTGGG
CGTGTCCCACTACCGCTTCTCCATCTCCTGGCCTAGAATCCTCCCCGACGGAACCACCAAGTTCATCAAC
GAAGCAGGCCTCAACTACTATGTTCGATTCATAGATGCGCTGCTGGCTGCTGGCATCACACCACAGGTGA
CCATGTATCACTGGGACCTGCCCCAGGCACTGCAGGACGTTGGGGGCTGGGAGAACGAGACAGTTGTACA
GCGGTTTAAGGACTATGCCGATGTGCTCTTCCGGAGGTTGGGGGACAAGGTCAAGTTCTGGATCACACTG
AATGAGCCCTTTGTCATTGCGGCCCACGGCTACGGCAGTGGGGTGTCTGCTCCAGGGATCTCTTTCAGAC
CTGGCACAGCTCCGTACACTGCTGGACACAACCTAATAAAGGCTCACGCTGAGGCTTGGCATCTCTACAA
CAGCACATACCGTAACAGCCAGGGAGGTGTGATCTCTATCACCATCAGCAGCGACTGGGCCGAGCCCAGA
GATCCTTCCAACCAGGAGGATGTGGAGGCGGCCAGGAGATACGTACAGTTTATGGGGGGCTGGTTTGCAC
ACCCCATCTTCAAAAACGGAGACTACCCTGAGGTGATGAAGACACGGATTCGTGACAGAAGCCTGGCGGC
AGGCCTCAACAAGTCCAGGCTCCCTGAATTTACAGAGAGCGAGAAGAAGAAGATCCAGGGCACCTTTGAC
TTTTTTGGGTTCAACCACTACACCACTGTCCTAGCCTACAACCTCAACTACGCCGCTGCTGTTTCGTCTT
TTGATGCCGATAGGGGAGTTGCTTCCATTACAGACCGCTCCTGGCCAGACTCTGGCTCCTTCTGGCTGAA
GATGACCCCTTTTGGCTTCCGGAGGATCTTGAACTGGTTGAAGGAGGAGTACAACAACCCTCTAATTTAT
GTCACAGAGAATGGAGTGTCCCGACGAGGAGACCCAGAACTCAATGACACCGACAGGATCTACTACCTCC
GCAGCTACATTAATGAAGCCCTCAAAGCTGTACGAGATAAGGTGGACCTTCGAGGGTACACGGTCTGGAG
CATCATGGACAACTTTGAATGGGCCACAGGCTTCGCAGAGAGGTTCGGCGTGCACTTTGTGAACCGCTCT
GACCCTTCTTTGCCAAGGATCCCCAAGGCGTCAGCCAAGGTCTACGCCTCCATAGTCCGCTGCAATGGCT
TTCCTGACCCTGCACAAGGACCTCATCCTTGTCTCCAGCAACCAGAAGATGCTGGGCCCACTGCCAGCCC
TGTGAAGTCAGAGGTGCCCTTCCTGGGGCTGATGCTGGGCACGGCAGAAGCACAGACGGCTCTGTATGTC
CTCTTCGCTCTTGTGCTGCTTGGAGTTTGCAGCGTGGCATTTCTGTTATACAAATACTGCAAGCGCTCCA
AGCAAGGGACAACACAGCCAGGCCACCACGGTCTGAGTCAAATTTCTTCCTTCTGA

Translation (1931 aa):
MELPWTALFLSTFLLGLSCQGNDWESDRNFISAAGPLTNDLVHNLNHPLGKQGSDLVAGDTDIYVCQQPL
PSFLPQYFSSLRASQVTHYKVLLSWAQLLPKGSSKNPDQEAVQCYRQLLQSLKDAQLQPMVVLFHQMPPT
STIQRDGGFADLFADYATLAFQSFGDLVEIWFTFSDLEKVIMGLPHQHLKASGLQTLSDAHRKAFDVYHR
KYSSQGGKLSVVLKAEDLPKLLPDPSSAALVKGSVDFLSLDLSYDCQSISTLPQKLSELQNLEPKVKVFV
YTLKPQDCPSTGMSPASLLFRLLEAINKDQVQTVGFDVSAFLSCTSSSEESPSCSLTYSSLALQSEQQHE
TVVSSFPGSAYQRVWAALANQSREERDAFLQDVFPEGFLWGVSTGAFNVEGGWAEGGRGPSIWDHYSNLN
AAESQATAKVASDSYHKPVSDVALLRGLRADVYKFSISWSRIFPFGQRTSPNLQGVAYYNKLIDSLLDSQ
VEPMATLFHWDLPQALQEQGGWQNESVVDAFLDYAAFCFSTFGDRVKLWVTFHEPWVISYAGYGTGQHAP
AISDPGVASFKVAHLILKAHARTWHHYNYHHRQKQQGRVGIVLNSDWAEPLDGKSPQDLAAAERYLHFML
GWFAHPIFIDGDYPAALRAQIQHTNQQCGRPLAQLPEFTEAEKRLLKGSADFLGLSHYTSRLISKAGQQT
CIPSYDNIGGFSQHVDPKWPQTASPWIRVVPWGIRRLLRFASLEYTKGKLPIFLAGNGMPIGEGSDLFDD
SMRVNYLNLYINEVLKAVKEDSVDVRSYIARSLIDGYEGPLGYSQRFGLYHVNFNDSSRPRTPRKSAYFF
TSIIEKNGFPAKKVKRNPLPLKADFSSRARAAFSFPSEVPSKAKVVWEKFSRQPKFERDLFYHGTFRDDF
LWGVSSSAYQIEGGWDADGKGPSIWDNFTHTPGNGVKDNATGDIACDSYHQLDADINILRTLKVKSYRFS
ISWPRIFPTGRNSSINKQGVDYYNKLIDRLLESNIFPMVTLFHWDLPQALQDIGGWENPSLIELFDSYAD
FCFKTFGDRVKFWMTFNEPWCSAVLGYSSGIFPPNVQDPGSLSYKVSHVIIKAHARVYHTYDEKYRQEQK
GVISLSLNTHWVEPKDPGVQRDVEAADRMLQFNLGWFAHPIFKNGDYPDVMKWNVGNRSELQHLASSRLP
SFTEEEKNYIRGTADVFCINTYTSVFAQHVTPRLNPPSYDNDMELKASDMNSSALISMMHQDVPWGMRRL
LNWIKEEYGNIPIYITENGQGLTNPTLDDTERIFYHKTYINEALKAYRLDGVDLRGYSAWALMDNFEWLH
GYTMRFGLYHVDFDHVNRPRTARASARYYTEVITNNGMPLAKEDEFLYGEFPKGFIWSAASASYQVEGAW
RADGKGLSIWDTFSHTPLKIGNDDNGDVACDSYHKIAEDVVALQNLGVSHYRFSISWPRILPDGTTKFIN
EAGLNYYVRFIDALLAAGITPQVTMYHWDLPQALQDVGGWENETVVQRFKDYADVLFRRLGDKVKFWITL
NEPFVIAAHGYGSGVSAPGISFRPGTAPYTAGHNLIKAHAEAWHLYNSTYRNSQGGVISITISSDWAEPR
DPSNQEDVEAARRYVQFMGGWFAHPIFKNGDYPEVMKTRIRDRSLAAGLNKSRLPEFTESEKKKIQGTFD
FFGFNHYTTVLAYNLNYAAAVSSFDADRGVASITDRSWPDSGSFWLKMTPFGFRRILNWLKEEYNNPLIY
VTENGVSRRGDPELNDTDRIYYLRSYINEALKAVRDKVDLRGYTVWSIMDNFEWATGFAERFGVHFVNRS
DPSLPRIPKASAKVYASIVRCNGFPDPAQGPHPCLQQPEDAGPTASPVKSEVPFLGLMLGTAEAQTALYV
LFALVLLGVCSVAFLLYKYCKRSKQGTTQPGHHGLSQISSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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