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Report for CCDS35743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35743.1 Public Mus musculus 1 Soat1 23 108 98 CCDS HistoryNCBI Gene:20652Re-query CCDS DB by CCDS ID:35743.1Re-query CCDS DB by GeneID:20652See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051396.12 ENSMUSP00000058344.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051396.12Link to Ensembl Protein Viewer:ENSMUSP00000058344.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051396Re-query CCDS DB by Protein ID:ENSMUSP00000058344
Original member Current member EBI ENSMUST00000189661.6 ENSMUSP00000140721.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189661.6Link to Ensembl Protein Viewer:ENSMUSP00000140721.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189661Re-query CCDS DB by Protein ID:ENSMUSP00000140721
Original member Current member NCBI NM_009230.3 NP_033256.2 Accepted alive Link to Nucleotide Sequence:NM_009230.3Link to Protein Sequence:NP_033256.2Re-query CCDS DB by Nucleotide ID:NM_009230Re-query CCDS DB by Protein ID:NP_033256Link to BLAST:NP_033256.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033256.2 540 Q61263 540 100% 0 0

Chromosomal Locations for CCDS 35743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156431059 156431115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156432204 156432349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156432847 156432982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156434153 156434251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156435793 156435890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156437704 156437833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156439288 156439333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156439701 156439782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156440507 156440585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156441229 156441511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156442381 156442488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156444555 156444614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156446541 156446692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156457946 156458004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156466681 156466768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGTCACTAAGAAACCGGCTGTCAAAATCTGGGGAGAATCCTGAGCAAGATGAAGCCCAGAAAAATTTCA
TGGACACATACAGAAATGGTCACATTACCATGAAACAATTGATAGCCAAGAAGAGGCTGTTGGCAGCAGA
GGCGGAGGAGCTGAAGCCACTATTTATGAAGGAAGTTGGGTGCCACTTCGATGACTTTGTGACCAACCTC
ATTGAAAAGTCCGCATCGCTGGACAATGGTGGGTGTGCACTCACAACCTTCTCCATTCTTGAAGAAATGA
AAAAGAACCACAGAGCCAAAGATCTGAGAGCACCTCCAGAACAAGGGAAGATTTTTATTTCAAGGCAGTC
TCTTTTAGACGAGCTGTTTGAAGTGGACCACATCAGAACAATTTACCACATGTTCATCGCACTCCTCATC
CTATTCGTCCTCAGCACGATCGTCGTGGACTACATCGATGAAGGAAGGCTGGTACTTGAGTTCAATCTCC
TGGCCTATGCTTTTGGCAAATTTCCTACTGTTATTTGGACATGGTGGGCCATGTTCCTGTCTACACTGTC
AATCCCCTATTTCCTGTTCCAGCGATGGGCCCACGGTTACAGCAAGAGTTCTCACCCATTGATCTATTCC
CTTGTCCATGGCTTGCTCTTCTTAGTCTTTCAACTTGGAGTTCTAGGTTTTGTGCCAACATACGTTGTCT
TAGCATACACACTGCCACCAGCCTCCCGGTTCATTCTGATACTGGAACAGATTCGTTTGATAATGAAGGC
TCACTCATTTGTCAGAGAGAATATCCCACGAGTACTAAATGCAGCCAAGGAGAAATCAAGCAAAGATCCA
CTACCCACAGTCAACCAGTACCTGTACTTCCTGTTTGCGCCTACACTTATTTACCGAGACAACTACCCAA
GGACTCCTACTGTAAGATGGGGTTATGTCGCTATGCAGTTTTTACAGGTGTTTGGCTGCCTGTTTTATGT
GTACTACATCTTTGAGAGACTCTGTGCCCCACTATTCCGGAATATCAAACAGGAGCCCTTCAGTGCTCGT
GTCCTGGTCCTGTGTGTGTTTAACTCCATCTTGCCAGGTGTCTTGATACTGTTCCTTTCGTTCTTTGCCT
TTTTGCACTGCTGGCTCAATGCCTTTGCTGAGATGTTACGCTTTGGTGACAGGATGTTTTATAAGGACTG
GTGGAACTCTACATCATACTCCAACTACTACAGGACCTGGAACGTGGTGGTGCACGACTGGCTCTACTAC
TATGTTTACAAAGACCTGCTCTGGTTTTTCTCGAAGAGGTTCAAATCTGCCGCCATGCTGGCCGTCTTCG
CCCTGTCGGCTGTGGTGCACGAGTATGCCCTCGCCATCTGCCTGAGTTACTTCTACCCGGTGCTCTTCGT
GCTCTTCATGTTCTTTGGAATGGCTTTTAACTTCATTGTTAACGACAGTCGGAAAAGGCCAATCTGGAAC
ATCATGGTTTGGGCTTCTCTGTTCCTGGGCTATGGACTCATTCTGTGCTTTTATTCTCAAGAGTGGTATG
CCCGCCAGCACTGTCCTCTGAAGAACCCTACATTTCTGGATTATGTCCGGCCGCGGACCTGGACTTGTCG
GTACGTGTTTTAG

Translation (540 aa):
MSLRNRLSKSGENPEQDEAQKNFMDTYRNGHITMKQLIAKKRLLAAEAEELKPLFMKEVGCHFDDFVTNL
IEKSASLDNGGCALTTFSILEEMKKNHRAKDLRAPPEQGKIFISRQSLLDELFEVDHIRTIYHMFIALLI
LFVLSTIVVDYIDEGRLVLEFNLLAYAFGKFPTVIWTWWAMFLSTLSIPYFLFQRWAHGYSKSSHPLIYS
LVHGLLFLVFQLGVLGFVPTYVVLAYTLPPASRFILILEQIRLIMKAHSFVRENIPRVLNAAKEKSSKDP
LPTVNQYLYFLFAPTLIYRDNYPRTPTVRWGYVAMQFLQVFGCLFYVYYIFERLCAPLFRNIKQEPFSAR
VLVLCVFNSILPGVLILFLSFFAFLHCWLNAFAEMLRFGDRMFYKDWWNSTSYSNYYRTWNVVVHDWLYY
YVYKDLLWFFSKRFKSAAMLAVFALSAVVHEYALAICLSYFYPVLFVLFMFFGMAFNFIVNDSRKRPIWN
IMVWASLFLGYGLILCFYSQEWYARQHCPLKNPTFLDYVRPRTWTCRYVF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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