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Report for CCDS35766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35766.1 Public Mus musculus 1 Hsd17b7 23 108 98 CCDS HistoryNCBI Gene:15490Re-query CCDS DB by CCDS ID:35766.1Re-query CCDS DB by GeneID:15490See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027989.12 ENSMUSP00000027989.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027989.12Link to Ensembl Protein Viewer:ENSMUSP00000027989.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027989Re-query CCDS DB by Protein ID:ENSMUSP00000027989
Original member NCBI NM_010476.3 NP_034606.3 Updated not alive Link to Nucleotide Sequence:NM_010476.3Link to Protein Sequence:NP_034606.3Re-query CCDS DB by Nucleotide ID:NM_010476Re-query CCDS DB by Protein ID:NP_034606
Current member NCBI NM_010476.4 NP_034606.3 Accepted alive Link to Nucleotide Sequence:NM_010476.4Link to Protein Sequence:NP_034606.3Re-query CCDS DB by Nucleotide ID:NM_010476Re-query CCDS DB by Protein ID:NP_034606Link to BLAST:NP_034606.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034606.3 334 O88736 334 100% 0 0

Chromosomal Locations for CCDS 35766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169953033 169953134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169955935 169956033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169959423 169959479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169959687 169959791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169961005 169961199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169964391 169964505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169965687 169965779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169967230 169967433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169969098 169969132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGCGGAAGGTGGTTTTGATCACCGGGGCGAGCAGTGGCATTGGGCTAGCCCTTTGCGGTCGACTGCTGG
CAGAAGACGATGACCTCCACCTGTGTTTGGCGTGTAGGAACCTGAGCAAAGCAAGAGCTGTTCGAGATAC
CCTGCTGGCCTCTCACCCCTCCGCCGAAGTCAGCATCGTGCAGATGGATGTCAGCAGCCTGCAGTCGGTG
GTCCGGGGTGCAGAGGAAGTCAAGCAAAAGTTTCAAAGATTAGACTACTTATATCTGAATGCTGGAATCC
TGCCTAATCCACAATTCAACCTCAAGGCATTTTTCTGCGGCATCTTTTCAAGAAATGTGATTCATATGTT
CACCACAGCGGAAGGAATTTTGACCCAGAATGACTCGGTCACTGCCGACGGGTTGCAGGAGGTGTTTGAA
ACCAATCTCTTTGGCCACTTTATTCTGATTCGGGAACTGGAACCACTTCTCTGCCATGCGGACAACCCCT
CTCAGCTCATCTGGACGTCCTCTCGCAATGCAAAGAAGGCTAACTTCAGCCTGGAGGACATCCAGCACTC
CAAAGGCCCGGAACCCTACAGCTCTTCCAAATATGCTACCGACCTCCTGAATGTGGCTTTGAACAGGAAT
TTCAACCAGAAGGGTCTGTATTCCAGTGTGATGTGCCCAGGCGTCGTGATGACCAATATGACGTATGGAA
TTTTGCCTCCCTTTATCTGGACGTTGCTCCTACCCATAATGTGGCTCCTTCGCTTTTTTGTAAATGCGCT
CACTGTGACACCGTACAACGGAGCAGAGGCCCTGGTGTGGCTCTTCCACCAAAAACCGGAGTCTCTTAAT
CCTCTGACCAAATACGCGAGCGCCACCTCGGGATTTGGGACTAATTACGTCACGGGCCAAAAGATGGACA
TAGATGAAGACACTGCTGAAAAATTCTATGAGGTCTTACTGGAGCTGGAAAAGCGTGTCAGGACCACCGT
TCAGAAATCGGATCACCCGAGCTGA

Translation (334 aa):
MRKVVLITGASSGIGLALCGRLLAEDDDLHLCLACRNLSKARAVRDTLLASHPSAEVSIVQMDVSSLQSV
VRGAEEVKQKFQRLDYLYLNAGILPNPQFNLKAFFCGIFSRNVIHMFTTAEGILTQNDSVTADGLQEVFE
TNLFGHFILIRELEPLLCHADNPSQLIWTSSRNAKKANFSLEDIQHSKGPEPYSSSKYATDLLNVALNRN
FNQKGLYSSVMCPGVVMTNMTYGILPPFIWTLLLPIMWLLRFFVNALTVTPYNGAEALVWLFHQKPESLN
PLTKYASATSGFGTNYVTGQKMDIDEDTAEKFYEVLLELEKRVRTTVQKSDHPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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