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Report for CCDS35868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35868.1 Public Mus musculus 10 Vnn1 23 108 98 CCDS HistoryNCBI Gene:22361Re-query CCDS DB by CCDS ID:35868.1Re-query CCDS DB by GeneID:22361See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35868.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041416.7 ENSMUSP00000040599.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041416.7Link to Ensembl Protein Viewer:ENSMUSP00000040599.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041416Re-query CCDS DB by Protein ID:ENSMUSP00000040599
Original member NCBI NM_011704.3 NP_035834.2 Updated not alive Link to Nucleotide Sequence:NM_011704.3Link to Protein Sequence:NP_035834.2Re-query CCDS DB by Nucleotide ID:NM_011704Re-query CCDS DB by Protein ID:NP_035834
Current member NCBI NM_011704.4 NP_035834.2 Accepted alive Link to Nucleotide Sequence:NM_011704.4Link to Protein Sequence:NP_035834.2Re-query CCDS DB by Nucleotide ID:NM_011704Re-query CCDS DB by Protein ID:NP_035834Link to BLAST:NP_035834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035834.2 512 Q9Z0K8 512 100% 0 0

Chromosomal Locations for CCDS 35868.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 23894876 23895091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23897293 23897423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23898408 23898600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23899394 23899685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23900585 23900943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23903386 23903556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23904478 23904654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGGCATGTCTTGGTGGCTGGCGTGTGCTGCAGCGTTTTCTGCCCTCTGTGTCTTAAAAGCCAGTTCGC
TG
GATACTTTCCTCGCGGCTGTTTACGAGCATGCTGTGATCCTGCCTAAGGACACCCTGTTGCCAGTGTC
T
CACAGTGAGGCTCTGGCATTAATGAACCAGAATCTGGACCTTCTGGAAGGAGCGATCGTATCTGCAGCG
AAG
CAGGGTGCGCACATTATTGTGACTCCAGAAGATGGCATATACGGTGTGCGTTTCACCAGGGATACGA
TC
TACCCATACCTGGAGGAGATCCCAGACCCTCAAGTAAACTGGATACCCTGTGATAACCCTAAAAGATT
T
GGCTCTACCCCGGTGCAGGAGAGACTCAGCTGCTTGGCCAAGAACAACTCCATCTATGTTGTGGCGAAC
ATG
GGAGACAAGAAGCCGTGTAACACCAGCGACTCTCACTGTCCACCTGACGGCAGATTCCAGTACAACA
CT
GATGTGGTGTTTGATTCCCAGGGTAAACTGGTTGCGAGATACCATAAGCAAAACATTTTCATGGGAGA
A
GATCAGTTCAATGTCCCCATGGAGCCTGAGTTTGTGACTTTCGACACCCCCTTTGGAAAGTTTGGCGTC
TTC
ACCTGTTTCGATATTCTCTTCCATGATCCCGCTGTCACCCTGGTGACAGAATTCCAGGTGGACACCA
TA
CTGTTCCCAACCGCCTGGATGGACGTCCTTCCTCATTTGGCAGCCATTGAATTCCACTCAGCTTGGGC
T
ATGGGCATGGGGGTCAATTTCCTAGCAGCTAATCTACATAATCCCTCGAGGAGAATGACAGGAAGTGGT
ATC
TATGCACCCGATTCTCCAAGGGTCTTTCACTACGACAGGAAGACCCAAGAAGGAAAACTCCTCTTCG
CT
CAGCTGAAATCCCACCCAATTCACTCCCCGGTGAACTGGACTTCCTATGCTAGCAGTGTAGAATCAAC
C
CCAACCAAAACCCAGGAATTTCAGAGTATTGTCTTTTTTGATGAGTTTACCTTTGTGGAGCTCAAAGGG
ATC
AAAGGAAATTACACTGTTTGCCAGAATGACCTCTGCTGTCACCTAAGCTACCAGATGTCTGAGAAGC
GA
GCAGATGAGGTTTATGCCTTTGGAGCCTTTGATGGGCTGCACACCGTGGAAGGGCAGTACTACCTACA
G
ATCTGCATCCTGCTAAAATGTAAAACTACCAATTTACGCACCTGTGGTAGTTCAGTGGACACGGCTTTT
ACC
AGGTTTGAAATGTTCTCGCTCAGCGGCACTTTTGGAACCCGGTATGTCTTCCCTGAAGTGTTGCTGA
GT
GAGGTCAAGCTCGCACCTGGGGAGTTTCAGGTGTCAAGTGATGGGCGCCTGGTTAGCCTGAAGCCAAC
C
TCGGGACCTGTGTTAACCATCGGGCTCTTTGGGAGGTTGTATGGGAAGGACTGGGCATCCAATGCTTCC
TCA
GACTTCATAGCACACTCGCTGATAATAATGCTGATTGTGACGCCTATTATACATTACTTGTGCTGA


Translation (512 aa):
MGMSWWLACAAAFSALCVLKASSLDTFLAAVYEHAVILPKDTLLPVSHSEALALMNQNLDLLEGAIVSAA
K
Q
GAHIIVTPEDGIYGVRFTRDTIYPYLEEIPDPQVNWIPCDNPKRFGSTPVQERLSCLAKNNSIYVVAN
M
GDKKPCNTSDSHCPPDGRFQYNTDVVFDSQGKLVARYHK
QNIFMGEDQFNVPMEPEFVTFDTPFGKFGV
F
TCFDILFHDPAVTLVTEFQVDTILFPTAWMDVLPHLAAIEFHSAWAMGMGVNFLAANLHNPSRRMT
GSG
I
YAPDSPRVFHYDRKTQEGKLLFAQLKSHPIHSPVNWTSYASSVESTPTKTQEFQSIVFFDEFTFVELKG
I
KGNYTVCQNDLCCHLSYQMSEKRADEVYAFGAFDGLHTVEGQYYLQ
ICILLKCKTTNLRTCGSSVDTAF
T
RFEMFSLSGTFGTRYVFPEVLLSEVKLAPGEFQ
VSSDGRLVSLKPTSGPVLTIGLFGRLYGKDWASNAS
S
DFIAHSLIIMLIVTPIIHYLC




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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