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Report for CCDS35881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35881.1 Public Mus musculus 10 Hs3st5 23 108 98 CCDS HistoryNCBI Gene:319415Re-query CCDS DB by CCDS ID:35881.1Re-query CCDS DB by GeneID:319415See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35881.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058738.10 ENSMUSP00000060229.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058738.10Link to Ensembl Protein Viewer:ENSMUSP00000060229.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058738Re-query CCDS DB by Protein ID:ENSMUSP00000060229
Original member Current member EBI ENSMUST00000168572.7 ENSMUSP00000129434.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168572.7Link to Ensembl Protein Viewer:ENSMUSP00000129434.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168572Re-query CCDS DB by Protein ID:ENSMUSP00000129434
Original member Current member EBI ENSMUST00000167191.7 ENSMUSP00000130778.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167191.7Link to Ensembl Protein Viewer:ENSMUSP00000130778.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167191Re-query CCDS DB by Protein ID:ENSMUSP00000130778
Original member Current member NCBI NM_001081208.2 NP_001074677.1 Accepted alive Link to Nucleotide Sequence:NM_001081208.2Link to Protein Sequence:NP_001074677.1Re-query CCDS DB by Nucleotide ID:NM_001081208Re-query CCDS DB by Protein ID:NP_001074677Link to BLAST:NP_001074677.1
Original member Current member NCBI NM_001253355.1 NP_001240284.1 Accepted alive Link to Nucleotide Sequence:NM_001253355.1Link to Protein Sequence:NP_001240284.1Re-query CCDS DB by Nucleotide ID:NM_001253355Re-query CCDS DB by Protein ID:NP_001240284Link to BLAST:NP_001240284.1
Original member Current member NCBI NM_001253356.1 NP_001240285.1 Accepted alive Link to Nucleotide Sequence:NM_001253356.1Link to Protein Sequence:NP_001240285.1Re-query CCDS DB by Nucleotide ID:NM_001253356Re-query CCDS DB by Protein ID:NP_001240285Link to BLAST:NP_001240285.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074677.1 346 Q8BSL4 346 100% 0 0
NP_001240284.1 346 Q8BSL4 346 100% 0 0
NP_001240285.1 346 Q8BSL4 346 100% 0 0

Chromosomal Locations for CCDS 35881.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 36828703 36828809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36832578 36833511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGCTATTCAAACAGCAGGTGTGGCTGAGACAGAAGCTCCTGGTACTGGGAAGCCTTGCTGTTGGGAGCC
TCCTGTATCTAGTTGCCAGAGTTGGGAGCTTGGATAGGCTCCAGCCCATTTGCCCTGTTGAAAGTCGATT
TGGTGGTGCCCACAACCAGGCTGAGTTGCCACTGCGGGCCCTGCAGTTTAAGAGAGGCTTGCTGCATGAG
TTCCGGAAGGGCAATTCTTCCAAGGAGCAGGTTCACCTCCATGACCTGGTCCAACAGCTCCCCAAAGCCA
TTATCATTGGGGTGAGAAAAGGGGGCACAAGGGCCCTGCTAGAGATGCTCAACCTCCATCCTGCAGTGGT
CAAAGCTTCCCAAGAGATCCACTTCTTTGACAATGATGAGAATTATGCCAAGGGCATTGAGTGGTACAGG
AAAAAGATGCCTTTTTCCTACCCTCAGCAAATCACGATTGAAAAGAGCCCGGCATATTTCATCACAGAAG
AGGTTCCGGAAAGGATTTACAAGATGAACTCATCCATCAAGCTGTTGATCATTGTCAGGGAGCCGACCAC
AAGAGCAATTTCTGATTATACTCAGGTGCTAGAGGGGAAGGAGCGGAAGAACAAAACCTACTATAAGTTT
GAAAAACTGGCTATAGACCCTAATACCTGTGAAGTGAACACGAAATACAAGGCGGTTAGGACCAGCATAT
ACACAAAACATCTGGAGCGCTGGTTGAAATACTTTCCCATTGAACAGTTTCATATCGTAGATGGTGACCG
TCTTATCACAGAACCTCTGCCGGAACTACAGCTGGTGGAAAAGTTCTTAAACCTTCCTCCGAGGATAAGT
CAGTACAATTTATATTTCAATGCTACCAGAGGGTTTTACTGTCTGAGATTTAACATTATCTTTAATAAGT
GCCTGGCGGGCAGCAAGGGGCGCATCCATCCAGAGGTAGACCCCTCCGTCATTACCAAATTGCGCAAATT
CTTTCATCCTTTTAATCAAAAATTTTACCAGATCACTGGGAGGACATTGAACTGGCCCTAA

Translation (346 aa):
MLFKQQVWLRQKLLVLGSLAVGSLLYLVARVGSLDRLQPICPVESRFGGAHNQAELPLRALQFKRGLLHE
FRKGNSSKEQVHLHDLVQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDNDENYAKGIEWYR
KKMPFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKTYYKF
EKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHIVDGDRLITEPLPELQLVEKFLNLPPRIS
QYNLYFNATRGFYCLRFNIIFNKCLAGSKGRIHPEVDPSVITKLRKFFHPFNQKFYQITGRTLNWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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